View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12769_low_3 (Length: 324)
Name: NF12769_low_3
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12769_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 29137583 - 29137284
Alignment:
| Q |
16 |
cacgcagaaagcttcacctctgcattcccgccggcggcgagagagagcaagatgaaaaccatcctctcttccgaaacaatggacattcccgacggagtaa |
115 |
Q |
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| T |
29137583 |
cacgcagaaagcttcacctctgcattcccgccggcggcgagagagagcaagatgaaaaccatcctctcttccgaaacaatggacattcccgacggagtaa |
29137484 |
T |
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| Q |
116 |
gcatcaaaatccatgccaaactcatcgaggttgaaggtccacgaggaaaattggtgcgagatttcaagcatttgaatctcgattttcagctaattacaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29137483 |
gcatcaaaatccatgccaaactcatcgaggttgaaggtccacgaggcaaattggtgcgagatttcaagcatttgaatctcgattttcagctaattacaga |
29137384 |
T |
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| Q |
216 |
tgaagaggggaagaagaagctaaaggttgaagcttggtttggatctaggaaaacctctgctgccattcgaactgctcttagtcatgttgataatctcatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29137383 |
tgaagaggggaagaagaagctaaaggttgaagcttggtttggatctaggaaaacctctgctgctattcgaactgctcttagtcatgttgataatctcatc |
29137284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 315
Target Start/End: Original strand, 42566775 - 42567023
Alignment:
| Q |
67 |
atgaaaaccatcctctcttccgaaacaatggacattcccgacggagtaagcatcaaaatccatgccaaactcatcgaggttgaaggtccacgaggaaaat |
166 |
Q |
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||||| ||||||||||| |||||||| ||| |||| || ||||| || |||||||| | | || || ||||||| || ||||| || || || ||| |
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| T |
42566775 |
atgaagaccatcctctcctccgaaaccatgaacatccctgacggcgttagcatcaaggttaacgctaaggtcatcgaagtcgaaggacctcgcgggaaac |
42566874 |
T |
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| Q |
167 |
tggtgcgagatttcaagcatttgaatctcgattttcagctaattacagatgaagaggggaagaagaagctaaaggttgaagcttggtttggatctaggaa |
266 |
Q |
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| T |
42566875 |
ttgttcgtgatttcaagcatctcaatctcgattttgatctcatcaccgatgaagaagggaagaagaagctgaagatcgatgcctggtttggttccaggaa |
42566974 |
T |
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| Q |
267 |
aacctctgctgccattcgaactgctcttagtcatgttgataatctcatc |
315 |
Q |
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|||||| || ||||| | || ||||| || || ||||| ||||||||| |
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| T |
42566975 |
aacctccgccgccatcaggacagctctcagccacgttgagaatctcatc |
42567023 |
T |
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