View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12769_low_7 (Length: 269)
Name: NF12769_low_7
Description: NF12769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12769_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 31496717 - 31496476
Alignment:
| Q |
20 |
gttcacttccagatgattgatcttgcaagtcaatggaacccgtctcggaaggtaaaagtgaataaagatactcagatgatgaattcctcttcattgaaga |
119 |
Q |
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| T |
31496717 |
gttcacttccaaatgattgatcttgcaagtcaatggagcccgtctcggaaggtaaaagtgaataaagatactcagatgatgaattcctcttcattgaaga |
31496618 |
T |
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| Q |
120 |
cgttggcttccaatgattatgtgtacctttgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccat |
219 |
Q |
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| T |
31496617 |
cgttggcttccaatgattatgtgtacctttgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccat |
31496518 |
T |
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| Q |
220 |
gtacatttataatagcttctttgattttcacttccctttgct |
261 |
Q |
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| T |
31496517 |
gtacatttataatagcttctttgattttcacttccttttgct |
31496476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 40845139 - 40844916
Alignment:
| Q |
20 |
gttcacttccagatgattgatcttgcaagtcaatggaacccgtctcggaaggtaaaagtgaataaagatactcagatgatgaattcctcttcattgaaga |
119 |
Q |
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| T |
40845139 |
gttcactgccaaatgattgatctagcaagtcaatagggccagtctcagaaggtaaaagtgaataaagatactcagatgatgagttcctcttcattgaaga |
40845040 |
T |
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| Q |
120 |
cgttggcttccaatgattatgtgtacctttgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccat |
219 |
Q |
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| T |
40845039 |
cgttggcttacaatgattatgtgtacctttgtataatgtctcaataatttctccatctat-----actcaacctttttcttcacaaaacaattaggccat |
40844945 |
T |
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| Q |
220 |
gtacatttataatagcttctttgattttc |
248 |
Q |
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| T |
40844944 |
gtacatttataatagcttctttgattttc |
40844916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 31389307 - 31389204
Alignment:
| Q |
149 |
tgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccatgtacatttataatagcttctttgattttc |
248 |
Q |
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|||||| ||||||||||| ||| ||||||||||||||| |||| |||||||||||| ||||||| ||| | |||||||||||||||| |||||||| |
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| T |
31389307 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatacca--catatttataatagcttctctgattttc |
31389210 |
T |
|
| Q |
249 |
acttcc |
254 |
Q |
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|||||| |
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| T |
31389209 |
acttcc |
31389204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 31462039 - 31461873
Alignment:
| Q |
82 |
taaagatactcagatgatgaattcctcttcattgaagacgttggcttccaatgattatgtgtacctttgtatagtgtctcaataacttctccatctattg |
181 |
Q |
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||||||||||||||| |||||||||| ||| ||||| | ||||| |||||||||||||| ||||| |||| |||||| ||| |||| |||| |
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| T |
31462039 |
taaagatactcagataatgaattccttttctttgaatttttaggcttacaatgattatgtgt------gtatattgtcacaataatctcttcatcaattg |
31461946 |
T |
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| Q |
182 |
ttctctcaacctttttcttcacaaaacaattaggccatgtacatttataatagcttctttgattttcacttcc |
254 |
Q |
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| T |
31461945 |
ttctcacaactctttccttcacaacaaaattaggctacatacatttattatagcttctctgattttcacttcc |
31461873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 8038633 - 8038677
Alignment:
| Q |
128 |
tccaatgattatgtgt-acctttgtatagtgtctcaataacttct |
171 |
Q |
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| T |
8038633 |
tccaatgattatgtgttacctttctatagtgtctcaataagttct |
8038677 |
T |
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