View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276_high_1 (Length: 704)
Name: NF1276_high_1
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276_high_1 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 110 - 471
Target Start/End: Complemental strand, 25410593 - 25410230
Alignment:
| Q |
110 |
tgagtgggaggtgcagcccgtcttgtgttgccaacggtaaggtct-gaggtggtggtttgcccggggttgagtgggggttcgctgcctttacctgtccgg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25410593 |
tgagtgggaggtgcagcccgtcttgtgttgccaacggtaaggtgttgaggtggtggttttcccggggttgagtgggggttcgctgcctttacctgtccgg |
25410494 |
T |
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| Q |
209 |
cctggcgtcctgggtttctctttttgttcttttttccgtgcaggtttgcgttcggtatgtggtgtctccctttggagatgcttcgtgggtgg-gtagatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||| | || |
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| T |
25410493 |
cctggcgtcctgggtttctctttttgttcttttttccgtgcaggttttcgtttggtgtgtggtgtctccctttggaggtgcttcgtgggtggtttccttt |
25410394 |
T |
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| Q |
308 |
attctttgttgttgtagtttttggtgatgcctttggagtgtttctctgtcctcacatgtgggggtagggtgttaccctacgggtattttagcaggctgtc |
407 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25410393 |
tttctttgttgttgtagtttttggtggtgccttcggagtgtttctctatcctcacctgtgggggtagggtgttaccctacgggtattttagcaggccgtc |
25410294 |
T |
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| Q |
408 |
tctaggcgacctcctgatgtattttgtattgttccatttttatatttatatatattttgctatt |
471 |
Q |
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| T |
25410293 |
tccaggcgacctcctggtatattttgtattgttccatttttatatttatatatattttgctatt |
25410230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 518 - 700
Target Start/End: Original strand, 8177699 - 8177881
Alignment:
| Q |
518 |
agagaatcattttagagaaaaagtgagaaatagaaacaaaccttgacatctattgattcaaagtatataaacataaagtatcctatcagcaatccaagtg |
617 |
Q |
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| T |
8177699 |
agagaatcattttagagaaaaagtgagaaatagaaacaaaccttgacatctattgattcaaagtatataaacataaagtatcctatcagcaatccaagtg |
8177798 |
T |
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| Q |
618 |
aagttccaattccaaatcctaaaaaactagctatagtacttaaaatactcatttcaacttcaatatcaatgcctatgatacta |
700 |
Q |
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| T |
8177799 |
aagttccaattccaaatcctaaaaaactagctatagtacttaaaatactcatttcaacttcaatatcaatgtctatggtacta |
8177881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 41927168 - 41927286
Alignment:
| Q |
172 |
ggggttgagtgggggttcgctgcctttacctgtccggcctggcgtcctgggtttctctttttgttcttttttccgtgcaggtttgcgttcggtatgtggt |
271 |
Q |
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||||||| ||||||||||||||||| ||||| |||||| || | |||||| ||||||||| |||||||||| | || || |||| |||||| |||||| |
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| T |
41927168 |
ggggttgggtgggggttcgctgcctctacctttccggcatgtcttcctggttttctctttgtgttcttttt-ctttggagacttgctttcggtgtgtggt |
41927266 |
T |
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| Q |
272 |
gtctccctttggagatgctt |
291 |
Q |
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| T |
41927267 |
gtctccctttggaggtgctt |
41927286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 23544690 - 23544653
Alignment:
| Q |
63 |
caacaatattcaaaacagaataaacaccacaggttctg |
100 |
Q |
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| T |
23544690 |
caacaatattcaaaacagaataaacacctcaggttctg |
23544653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 23076120 - 23076083
Alignment:
| Q |
63 |
caacaatattcaaaacagaataaacaccacaggttctg |
100 |
Q |
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| T |
23076120 |
caacaatgttcaaaacagaataaacacctcaggttctg |
23076083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 137408 - 137445
Alignment:
| Q |
63 |
caacaatattcaaaacagaataaacaccacaggttctg |
100 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |
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| T |
137408 |
caacaatattcaaaacaaaataaacacctcaggttctg |
137445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 32911288 - 32911251
Alignment:
| Q |
63 |
caacaatattcaaaacagaataaacaccacaggttctg |
100 |
Q |
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| T |
32911288 |
caacaatattcaaaacagaataaacccctcaggttctg |
32911251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 10994506 - 10994534
Alignment:
| Q |
110 |
tgagtgggaggtgcagcccgtcttgtgtt |
138 |
Q |
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| T |
10994506 |
tgagtgggaggtgcagcccgtcttgtgtt |
10994534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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