View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1276_high_4 (Length: 364)

Name: NF1276_high_4
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1276_high_4
NF1276_high_4
[»] chr8 (5 HSPs)
chr8 (7-228)||(31372927-31373150)
chr8 (57-148)||(31398651-31398738)
chr8 (240-280)||(30773112-30773152)
chr8 (240-279)||(5752201-5752240)
chr8 (170-218)||(31398575-31398624)
[»] chr7 (3 HSPs)
chr7 (275-354)||(47543531-47543610)
chr7 (240-280)||(47543646-47543686)
chr7 (240-280)||(31030209-31030249)
[»] chr6 (3 HSPs)
chr6 (275-354)||(32196732-32196811)
chr6 (240-280)||(32196656-32196696)
chr6 (248-280)||(16853223-16853255)
[»] chr5 (5 HSPs)
chr5 (275-354)||(16610673-16610752)
chr5 (240-280)||(16610788-16610828)
chr5 (241-280)||(30722365-30722404)
chr5 (241-280)||(29651644-29651683)
chr5 (241-279)||(31706269-31706307)
[»] chr2 (2 HSPs)
chr2 (275-354)||(8090573-8090652)
chr2 (240-280)||(20948324-20948364)
[»] chr1 (8 HSPs)
chr1 (275-354)||(32160174-32160252)
chr1 (241-280)||(1951845-1951884)
chr1 (240-281)||(27363598-27363639)
chr1 (241-281)||(15259619-15259659)
chr1 (240-280)||(27264799-27264839)
chr1 (275-305)||(1951920-1951950)
chr1 (242-275)||(41429795-41429828)
chr1 (240-280)||(32160288-32160328)
[»] chr3 (4 HSPs)
chr3 (275-354)||(4741104-4741180)
chr3 (241-280)||(4741216-4741255)
chr3 (240-281)||(13043568-13043609)
chr3 (240-281)||(13051645-13051686)
[»] chr4 (1 HSPs)
chr4 (241-280)||(1002951-1002990)
[»] scaffold0274 (1 HSPs)
scaffold0274 (241-281)||(15056-15096)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 31373150 - 31372927
Alignment:
Q  7 cctcttatacataaatcgtatacatcacaaaatgtttaggtgctactaatggaagataattgtatcgttttaattccagtcatcccgtatttgttatttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31373150 cctcttatacataaatcgtatacatcacaaaatgtttaggtgctactaaaggaagataattgtatcgttttaattccagtcatcccgtatttgttatttt 31373051  T
Q  107 atataatttcattcatggtaaatcgattgaagaggccttaaagac-nnnnnnncctcaatccataaacaa-tgtgagtggtcatttatcaaattaaatta 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  31373050 atataatttcattcatggtaaatcgattgaagtggccttaaagactttttttccctcaatccataaacaattgtgagtggtcatttatcaaattaaatta 31372951  T
Q  205 tgtatttaatttaaaggttgaaag 228  Q
    ||||||||||||||||||||||||    
T  31372950 tgtatttaatttaaaggttgaaag 31372927  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 31398738 - 31398651
Alignment:
Q  57 ggaagataattgtatcgttttaattccagtcatcccgtatttgttattttatataatttcattcatggtaaatcgattgaagaggccttaaa 148  Q
    |||||||||||||||    |||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  31398738 ggaagataattgtat----ttaattccacgcatcccgtattttttattttatataatttcattcatggtaaatcgattgaattggccttaaa 31398651  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 30773152 - 30773112
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  30773152 gaagaagttaaaatgaattataataccacctcaaaagagtc 30773112  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 5752240 - 5752201
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagt 279  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  5752240 gaagaagctaaaatgaattatattaccacctcaaaagagt 5752201  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 31398624 - 31398575
Alignment:
Q  170 aaacaatgtga-gtggtcatttatcaaattaaattatgtatttaatttaa 218  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  31398624 aaacaatgtgaagtggtcatttatcaaatgaaattatgtatttaaattaa 31398575  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 47543610 - 47543531
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgccaaacagatcataaacaaaaaacagaaaagaaactctgagccaatgccta 354  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  47543610 agagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgccta 47543531  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 47543686 - 47543646
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47543686 gaagaagctaaaatgaattataataccacctcaaaagagtc 47543646  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 31030209 - 31030249
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  31030209 gaagaagctaaaatgaattatattaccacctcaaaagagtc 31030249  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 32196732 - 32196811
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgccaaacagatcataaacaaaaaacagaaaagaaactctgagccaatgccta 354  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  32196732 agagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgccta 32196811  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 32196656 - 32196696
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32196656 gaagaagctaaaatgaattataataccacctcaaaagagtc 32196696  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 16853255 - 16853223
Alignment:
Q  248 taaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||| ||||||||||||||||||    
T  16853255 taaaatgaattatattaccacctcaaaagagtc 16853223  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 16610752 - 16610673
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgccaaacagatcataaacaaaaaacagaaaagaaactctgagccaatgccta 354  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  16610752 agagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactattagccaatgccta 16610673  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 16610828 - 16610788
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16610828 gaagaagctaaaatgaattataataccacctcaaaagagtc 16610788  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 30722365 - 30722404
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  30722365 aagaagctaaaatgaattatattaccacctcaaaagagtc 30722404  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 29651644 - 29651683
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  29651644 aagaagctaaaatgaattatattaccacctaaaaagagtc 29651683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 31706269 - 31706307
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagt 279  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  31706269 aagaagttaaaatgaattatattaccacctcaaaagagt 31706307  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 8090652 - 8090573
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgccaaacagatcataaacaaaaaacagaaaagaaactctgagccaatgccta 354  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8090652 agagttaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactcttagccaatgccta 8090573  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 20948364 - 20948324
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  20948364 gaagaagctaaaatgaattatattaccacctcaaaagagtc 20948324  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 32160252 - 32160174
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgccaaacagatcataaacaaaaaacagaaaagaaactctgagccaatgccta 354  Q
    |||||||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||| ||||||||||||    
T  32160252 agagtcaagaacaatatatacaaaagttacctaagagatcataaaca-aaaacagaaaagaaactcttagccaatgccta 32160174  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 1951845 - 1951884
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1951845 aagaagctaaaatgaattataataccacctcaaaagagtc 1951884  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 27363598 - 27363639
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtca 281  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  27363598 gaagaagttaaaatgaattatattaccacctcaaaagagtca 27363639  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 15259659 - 15259619
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtca 281  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  15259659 aagaagttaaaatgaattatattaccacctcaaaagagtca 15259619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 27264839 - 27264799
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  27264839 gaagaagttaaaatgaattatattaccacctcaaaagagtc 27264799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 1951920 - 1951950
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgcc 305  Q
    |||||||||||||||||||||||||||||||    
T  1951920 agagtcaagaacaatatatacaaaagttgcc 1951950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 41429828 - 41429795
Alignment:
Q  242 agaagctaaaatgaattataataccacctcaaaa 275  Q
    |||||||||||||||||||| |||||||||||||    
T  41429828 agaagctaaaatgaattatattaccacctcaaaa 41429795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 32160328 - 32160288
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    |||||||||||||||||||||||||| || |||||| ||||    
T  32160328 gaagaagctaaaatgaattataatactacttcaaaaaagtc 32160288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 4741180 - 4741104
Alignment:
Q  275 agagtcaagaacaatatatacaaaagttgcc-aaacagatcataaacaaaaaacagaaaagaaactctgagccaatgccta 354  Q
    ||||||||||||||||||||||| |||||||  |||||| |||    ||||||||||||||||||||| |||| |||||||    
T  4741180 agagtcaagaacaatatatacaatagttgcctgaacagagcat----aaaaaacagaaaagaaactcttagcctatgccta 4741104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 4741255 - 4741216
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4741255 aagaagctaaaatgaattataatactacctcaaaagagtc 4741216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 13043609 - 13043568
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtca 281  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  13043609 gaagaagttaaaatgaattatattaccacctcaaaagagtca 13043568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 13051686 - 13051645
Alignment:
Q  240 gaagaagctaaaatgaattataataccacctcaaaagagtca 281  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  13051686 gaagaagttaaaatgaattatattaccacctcaaaagagtca 13051645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 1002990 - 1002951
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtc 280  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  1002990 aagaaactaaaatgaattatattaccacctcaaaagagtc 1002951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 15056 - 15096
Alignment:
Q  241 aagaagctaaaatgaattataataccacctcaaaagagtca 281  Q
    |||||| |||||||| ||||| |||||||||||||||||||    
T  15056 aagaagttaaaatgagttatattaccacctcaaaagagtca 15096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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