View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276_low_10 (Length: 292)
Name: NF1276_low_10
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 30435967 - 30436148
Alignment:
| Q |
50 |
cagaacctgtgcaaattaaagatgtaattaacaaaatttacgacttccaaaagcctaatgcgaacccgcttgtcaggttactaggttgtggtcttgtaag |
149 |
Q |
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| T |
30435967 |
cagatcctgagcaaattaaagatgtaattaacaaaatttacgacttccaaaagcctaatgtgaacccgcttgtcaggttactaggttgtggtcttgtatg |
30436066 |
T |
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| Q |
150 |
tcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggcaagtttccct |
231 |
Q |
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| T |
30436067 |
tcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggtaagtttccct |
30436148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 30467768 - 30467938
Alignment:
| Q |
61 |
caaattaaagatgtaattaacaaaatttacgacttccaaaagcctaatgcgaacccgcttgtcaggttactaggttgtggtcttgtaagtcttgagggag |
160 |
Q |
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| T |
30467768 |
caaattaaagatgtattaaacaaaatttacgacttccaaaagcctaatgcgaacccgcttgtcaggttactagctaatggtcttgtaagtcttgagggag |
30467867 |
T |
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| Q |
161 |
aacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggcaagtttccct |
231 |
Q |
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| T |
30467868 |
aacagtggagcaagcacagaaagataatcaatcctgcattccatttagaaaaattgaaggaaagtttccct |
30467938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 30423763 - 30423944
Alignment:
| Q |
50 |
cagaacctgtgcaaattaaagatgtaattaacaaaatttacgacttccaaaagcctaatgcgaacccgcttgtcaggttactaggttgtggtcttgtaag |
149 |
Q |
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| T |
30423763 |
cagatcctgagctaattagagatgtatttaacaaaatgtacgacttccaaaagcctattgcgaatccgcttggaaagttactagctaatggtcttataag |
30423862 |
T |
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| Q |
150 |
tcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggcaagtttccct |
231 |
Q |
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| T |
30423863 |
tcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatttagaaaaattgaaggaaagtttccct |
30423944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 30429810 - 30429977
Alignment:
| Q |
64 |
attaaagatgtaattaacaaaatttacgacttccaaaagcctaatgcgaacccgcttgtcaggttactaggttgtggtcttgtaagtcttgagggagaac |
163 |
Q |
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| T |
30429810 |
attagagatgtatttaacaaaatgtacgacttccaaaagcctaatgcgaatccgcttggaaagttactagctaatggccttgcaagtcatgagggagaac |
30429909 |
T |
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| Q |
164 |
agtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggcaagtttccct |
231 |
Q |
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| T |
30429910 |
agtggagcaagcacagaaagattatcaaccctgcattccatgtagaaaaattgaaggaaagtttccct |
30429977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 30474884 - 30475063
Alignment:
| Q |
50 |
cagaacctgtgcaaattaaagatgtaattaacaaaatttacgacttccaaaagcctaatgcgaacccgcttgtcaggttactaggttgtggtcttgtaag |
149 |
Q |
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| T |
30474884 |
cagatcctgagctaattaaatatgttcttaacaaaatctacgacttccaaaagcctaatgcgagtccgcttgttaggttactagctaatggtcttgtaaa |
30474983 |
T |
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| Q |
150 |
tcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggcaagtttcc |
229 |
Q |
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| T |
30474984 |
cctcgagggcgaaaagtggagcaagcacagaaagctaattaatccggcattcaatatagaaaaattgaaggcaagtttcc |
30475063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 30482088 - 30482228
Alignment:
| Q |
91 |
gacttccaaaagcctaatgcgaacccgcttgtcaggttactaggttgtggtcttgtaagtcttgagggagaacagtggagcaagcacagaaagataataa |
190 |
Q |
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| T |
30482088 |
gacttccaaaagcctaactcgaatcctcttgtgagaatactagctactggtcttataacccatgagggtgaaaagtggagcaagcatagaaagataataa |
30482187 |
T |
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| Q |
191 |
atcctgcattccatttagaaaaattgaaggcaagtttccct |
231 |
Q |
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| T |
30482188 |
atcctgcattccatttagaaaaattgaaggttagtttccct |
30482228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 30383754 - 30383821
Alignment:
| Q |
153 |
tgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaagg |
220 |
Q |
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|||||||||| ||||||||||||| |||||| |||| || ||||| |||||||||||||| ||||||| |
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| T |
30383754 |
tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg |
30383821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 30393878 - 30393972
Alignment:
| Q |
126 |
gttactaggttgtggtcttgtaagtcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaagg |
220 |
Q |
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| T |
30393878 |
gttactagctagtggtcttgctagttatgggggagaaaaatggagcaagcatagaaggctaatcaaccctgctttccatttagaacaattgaagg |
30393972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 41628822 - 41628728
Alignment:
| Q |
126 |
gttactaggttgtggtcttgtaagtcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaagg |
220 |
Q |
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| T |
41628822 |
gttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccccgctttccattcagaaaaattgaagg |
41628728 |
T |
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