View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1276_low_11 (Length: 287)

Name: NF1276_low_11
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1276_low_11
NF1276_low_11
[»] chr7 (14 HSPs)
chr7 (82-223)||(22887345-22887485)
chr7 (82-222)||(22803382-22803521)
chr7 (82-223)||(22869879-22870019)
chr7 (15-66)||(42734911-42734962)
chr7 (15-66)||(43351608-43351659)
chr7 (107-200)||(22807172-22807265)
chr7 (15-66)||(42734776-42734827)
chr7 (15-66)||(43351741-43351792)
chr7 (15-65)||(15347570-15347620)
chr7 (15-66)||(15347449-15347500)
chr7 (15-66)||(1643106-1643157)
chr7 (15-66)||(5282690-5282741)
chr7 (122-223)||(22884744-22884845)
chr7 (82-134)||(22829173-22829224)
[»] chr1 (29 HSPs)
chr1 (13-66)||(35184500-35184553)
chr1 (13-66)||(35576153-35576206)
chr1 (15-66)||(23341836-23341887)
chr1 (15-66)||(12791916-12791967)
chr1 (15-66)||(23342290-23342341)
chr1 (15-66)||(35587574-35587625)
chr1 (15-66)||(37777604-37777655)
chr1 (15-66)||(39857543-39857594)
chr1 (15-66)||(49263395-49263446)
chr1 (15-66)||(49263530-49263581)
chr1 (123-223)||(21152445-21152545)
chr1 (23-66)||(12791790-12791833)
chr1 (15-66)||(24270866-24270917)
chr1 (15-66)||(24271001-24271052)
chr1 (15-66)||(35587439-35587490)
chr1 (15-66)||(37777738-37777789)
chr1 (15-66)||(38046943-38046994)
chr1 (15-66)||(38047077-38047128)
chr1 (15-66)||(39857414-39857465)
chr1 (15-66)||(13283075-13283126)
chr1 (15-66)||(13283208-13283259)
chr1 (15-66)||(17372249-17372300)
chr1 (15-66)||(17686853-17686904)
chr1 (15-66)||(17686985-17687036)
chr1 (15-65)||(13282943-13282993)
chr1 (26-66)||(35574829-35574869)
chr1 (15-66)||(21307995-21308046)
chr1 (33-66)||(35184636-35184669)
chr1 (15-66)||(17372363-17372415)
[»] scaffold0769 (2 HSPs)
scaffold0769 (15-66)||(355-406)
scaffold0769 (15-66)||(222-273)
[»] chr5 (12 HSPs)
chr5 (15-66)||(11356873-11356924)
chr5 (15-66)||(1970936-1970987)
chr5 (15-66)||(11356740-11356791)
chr5 (15-66)||(36350940-36350991)
chr5 (21-66)||(6795113-6795158)
chr5 (15-66)||(1690892-1690943)
chr5 (15-66)||(4724587-4724638)
chr5 (17-66)||(1971069-1971118)
chr5 (15-66)||(1690761-1690812)
chr5 (15-66)||(36350806-36350857)
chr5 (15-65)||(6794975-6795025)
chr5 (15-66)||(18920365-18920416)
[»] chr4 (26 HSPs)
chr4 (15-66)||(2772653-2772704)
chr4 (15-66)||(21169097-21169148)
chr4 (15-66)||(22436427-22436478)
chr4 (15-66)||(26592196-26592247)
chr4 (15-66)||(36777031-36777082)
chr4 (15-66)||(43890011-43890062)
chr4 (15-66)||(49792445-49792496)
chr4 (15-66)||(51029211-51029262)
chr4 (15-66)||(11284743-11284794)
chr4 (15-66)||(26592335-26592386)
chr4 (15-66)||(47657985-47658036)
chr4 (15-66)||(49792579-49792630)
chr4 (15-66)||(20902119-20902170)
chr4 (15-66)||(21413043-21413094)
chr4 (15-66)||(22436563-22436614)
chr4 (15-66)||(25762246-25762297)
chr4 (15-66)||(47657852-47657903)
chr4 (15-66)||(49818156-49818207)
chr4 (15-66)||(26592467-26592518)
chr4 (23-66)||(36777172-36777215)
chr4 (23-66)||(45936993-45937036)
chr4 (15-66)||(45937127-45937178)
chr4 (15-66)||(49818290-49818341)
chr4 (15-64)||(10311790-10311839)
chr4 (15-66)||(11284605-11284660)
chr4 (15-63)||(10311921-10311969)
[»] chr3 (23 HSPs)
chr3 (15-66)||(34472525-34472576)
chr3 (15-66)||(42328622-42328673)
chr3 (15-66)||(46414844-46414895)
chr3 (15-66)||(47760534-47760585)
chr3 (15-66)||(10053767-10053818)
chr3 (15-66)||(11379251-11379302)
chr3 (15-66)||(14630968-14631019)
chr3 (15-66)||(30192199-30192250)
chr3 (15-66)||(47760398-47760449)
chr3 (15-66)||(50459250-50459301)
chr3 (15-66)||(51014803-51014854)
chr3 (15-65)||(44927136-44927186)
chr3 (15-66)||(14631102-14631153)
chr3 (15-66)||(42328740-42328791)
chr3 (15-66)||(49273118-49273169)
chr3 (15-66)||(50459116-50459167)
chr3 (15-66)||(51013786-51013837)
chr3 (15-66)||(51014937-51014988)
chr3 (15-66)||(10053900-10053951)
chr3 (15-66)||(11379384-11379435)
chr3 (15-66)||(51013921-51013972)
chr3 (23-66)||(27186598-27186641)
chr3 (15-66)||(30192064-30192115)
[»] chr2 (10 HSPs)
chr2 (15-66)||(6976492-6976543)
chr2 (15-66)||(34522319-34522370)
chr2 (15-66)||(10360645-10360696)
chr2 (15-66)||(27131012-27131063)
chr2 (15-66)||(34522186-34522237)
chr2 (15-66)||(6976357-6976408)
chr2 (15-66)||(33403430-33403481)
chr2 (15-66)||(37313002-37313053)
chr2 (23-66)||(10360788-10360831)
chr2 (15-66)||(33403658-33403709)
[»] scaffold0589 (2 HSPs)
scaffold0589 (15-66)||(1786-1837)
scaffold0589 (15-66)||(1918-1969)
[»] chr8 (11 HSPs)
chr8 (15-66)||(26484231-26484282)
chr8 (19-66)||(19242806-19242853)
chr8 (19-66)||(19315990-19316037)
chr8 (15-66)||(26484106-26484157)
chr8 (15-66)||(38034563-38034614)
chr8 (15-66)||(41363371-41363422)
chr8 (15-66)||(42169474-42169525)
chr8 (15-56)||(34614645-34614686)
chr8 (15-66)||(19242668-19242719)
chr8 (15-66)||(19315852-19315903)
chr8 (15-66)||(38034431-38034482)
[»] chr6 (2 HSPs)
chr6 (15-66)||(12396425-12396476)
chr6 (15-66)||(34132222-34132273)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 22887485 - 22887345
Alignment:
Q  82 aaagactcagacaagctattcatctttttctcctctgctcgttctattttcttggacatttcagtaattctgcatatgcacatctaagatcaagttatca 181  Q
    ||||||||| ||||||| |||||||||| ||||| | ||||||| ||||||||  ||| ||||||| |||||||||||||||| |||||| |||||| |     
T  22887485 aaagactcaaacaagctcttcatctttt-ctcctttactcgttcgattttcttcaacacttcagtagttctgcatatgcacatataagattaagttaacg 22887387  T
Q  182 agatgcatagaatgggccctaaaattgaacacatcataatca 223  Q
     |||| |||||||| |||||||||||||||||||||||||||    
T  22887386 ggatgtatagaatgagccctaaaattgaacacatcataatca 22887345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 22803521 - 22803382
Alignment:
Q  82 aaagactcagacaagctattcatctttttctcctctgctcgttctattttcttggacatttcagtaattctgcatatgcacatctaagatcaagttatca 181  Q
    |||||||| |||||||| |||||||||| |||||    |||||||||||||||||||| |||| |||||| | |||||||||| |||||| ||||||||     
T  22803521 aaagactcggacaagctcttcatctttt-ctccttcagtcgttctattttcttggacacttcaataattcagtatatgcacatataagattaagttatcg 22803423  T
Q  182 agatgcatagaatgggccctaaaattgaacacatcataatc 222  Q
     ||||||||||||  |||  ||||||||| |||||||||||    
T  22803422 ggatgcatagaataagcctgaaaattgaaaacatcataatc 22803382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 22870019 - 22869879
Alignment:
Q  82 aaagactcagacaagctattcatctttttctcctctgctcgttctattttcttggacatttcagtaattctgcatatgcacatctaagatcaagttatca 181  Q
    |||||||| |||||||| |||||||||| |||||    |||||||||||||||||||| |||| |||||| | |||||||||| |||||| ||||||||     
T  22870019 aaagactcggacaagctcttcatctttt-ctccttcagtcgttctattttcttggacacttcaataattcagtatatgcacatataagattaagttatcg 22869921  T
Q  182 agatgcatagaatgggccctaaaattgaacacatcataatca 223  Q
     ||||||||||||  |||  ||| ||||| ||||||||||||    
T  22869920 ggatgcatagaataagcctgaaagttgaaaacatcataatca 22869879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 42734962 - 42734911
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42734962 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 42734911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 43351608 - 43351659
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43351608 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 43351659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 22807265 - 22807172
Alignment:
Q  107 ttttctcctctgctcgttctattttcttggacatttcagtaattctgcatatgcacatctaagatcaagttatcaagatgcatagaatgggccc 200  Q
    ||||||||||  |||||| |||||| ||||| | |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||| ||||    
T  22807265 ttttctcctccactcgttttattttattggatacttcagtaattctgcatatgcacatataagattaagttatcaggatgcctagaatgagccc 22807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 42734827 - 42734776
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42734827 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 42734776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 43351741 - 43351792
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  43351741 tataacaagtattcataatatatgttaatagcatttcatatctacaacataa 43351792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 15347570 - 15347620
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacata 65  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  15347570 tataacaagtattcataatatttgttaatagcatttcagatctacaacata 15347620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 15347449 - 15347500
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||||||    
T  15347449 tataacaagtattcataatatttgctaatagcatttcagatctacaacataa 15347500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 1643106 - 1643157
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||  |||||||||||| ||||| ||||||||||||||||||||||||    
T  1643106 tataacaactattcataatatttgttattagcatttcagatctacaacataa 1643157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 5282690 - 5282741
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  5282690 tataacaagtattcataatacttgttaataacatttcagatctacaacataa 5282741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 22884845 - 22884744
Alignment:
Q  122 gttctattttcttggacatttcagtaattctgcatatgcacatctaagatcaagttatcaagatgc------atagaatgggccctaaaattgaacacat 215  Q
    ||||||||||| |||||| |||||||||||||||||||| ||| |      ||||||||| |||||      |||||||| |||||||||||||||| ||    
T  22884845 gttctattttcgtggacacttcagtaattctgcatatgcccatat------aagttatcaggatgcatagaaatagaatgagccctaaaattgaacagat 22884752  T
Q  216 cataatca 223  Q
    ||||||||    
T  22884751 cataatca 22884744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 22829224 - 22829173
Alignment:
Q  82 aaagactcagacaagctattcatctttttctcctctgctcgttctattttctt 134  Q
    ||||||||||||||||| |||||| ||||||||||  ||||||||| ||||||    
T  22829224 aaagactcagacaagctcttcatc-ttttctcctccactcgttctaatttctt 22829173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 35184553 - 35184500
Alignment:
Q  13 aatataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35184553 aatataacaggtattcataatatatgttaatagcatttcagatctacaacataa 35184500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 35576206 - 35576153
Alignment:
Q  13 aatataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35576206 aatataacaggtattcataatatatgttaatagcatttcagatctacaacataa 35576153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 23341887 - 23341836
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23341887 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 23341836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 12791916 - 12791967
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12791916 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 12791967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 23342341 - 23342290
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23342341 tataacaggtattcataatatatgttaatagcatttcagatctaaaacataa 23342290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 35587574 - 35587625
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35587574 tataacatgtattcataatatatgttaatagcatttcagatctacaacataa 35587625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 37777655 - 37777604
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37777655 tataacaggtattcataatatatgttaataacatttcagatctacaacataa 37777604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 39857543 - 39857594
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39857543 tataacaagtattcataatatatgttaatagcatttcagatctacaacataa 39857594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 49263395 - 49263446
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49263395 tataacaggtattcataatatatgttaatagcatttcaaatctacaacataa 49263446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 49263530 - 49263581
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49263530 tataacatgtattcataatatatgttaatagcatttcagatctacaacataa 49263581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 21152445 - 21152545
Alignment:
Q  123 ttctattttcttggacatttcagtaattctgcatatgcacatctaagatcaagttatcaagatgcatagaatgggccctaaaattgaacacatcataatc 222  Q
    ||||||||||||||||| || || |||||| ||||||||||| |||||| |||||||   |||| |||||||  |||||||||| |||||||| ||||||    
T  21152445 ttctattttcttggacacttgagcaattcttcatatgcacatataagattaagttattgggatgaatagaataagccctaaaatggaacacatgataatc 21152544  T
Q  223 a 223  Q
    |    
T  21152545 a 21152545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 12791790 - 12791833
Alignment:
Q  23 gtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12791790 gtattcataatatatgttaatagcatttcagatctacaacataa 12791833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 24270866 - 24270917
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  24270866 tataacaggtattcataatatatgttaataacatttcagatctacaagataa 24270917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 24271001 - 24271052
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  24271001 tataacaagtattcataatatatgttaatatcatttcagatctacaacataa 24271052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 35587439 - 35587490
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  35587439 tataacaagtattcataatatatgttaatagcatttcaaatctacaacataa 35587490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 37777789 - 37777738
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  37777789 tataacaggtattcataacgtatgttaatagcatttcagatctacaacataa 37777738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 38046943 - 38046994
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  38046943 tataacagatattcataatatatgttaataacatttcagatctacaacataa 38046994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 38047077 - 38047128
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  38047077 tataacatgtattcataatatatgttaatagtatttcagatctacaacataa 38047128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 39857414 - 39857465
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  39857414 tataacatgtattcataatatatgttaatagcatttcagatctacaatataa 39857465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 13283126 - 13283075
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  13283126 tataacaagtattcataatatttgttaataacatttcagatctacaacataa 13283075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 13283259 - 13283208
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  13283259 tataacaagtattcataatatttgttaataacatttcagatctacaacataa 13283208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 17372300 - 17372249
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  17372300 tataacaagtattcataatatttgttgatagcatttcagatctacaacataa 17372249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 17686853 - 17686904
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  17686853 tataacatgtattcataatatatgttaatagtatttcagatctacatcataa 17686904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 17686985 - 17687036
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  17686985 tataacagatattcataatatatgttaataacatttcagatatacaacataa 17687036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 13282993 - 13282943
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacata 65  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  13282993 tataacaagtattcataatatttgttaataacatttcagatctacaacata 13282943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 35574869 - 35574829
Alignment:
Q  26 ttcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  35574869 ttcataatatatgttaatagtatttcagatctacaacataa 35574829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 21307995 - 21308046
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||  |||||||||||||||| |||||||||||||    
T  21307995 tataacaagtattcataatacttgttaatagcatttcaaatctacaacataa 21308046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 35184669 - 35184636
Alignment:
Q  33 tatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||    
T  35184669 tatatgttaatagcatttcagatctacaacataa 35184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 17372415 - 17372363
Alignment:
Q  15 tataacaggtattcataatatatgtt-aatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| | || ||||||||||||||||||||||||||    
T  17372415 tataacaagtattcataatatttttttaatagcatttcagatctacaacataa 17372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 355 - 406
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  355 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 222 - 273
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  222 tataacaggtattcataatatatgttaatagcattttagatctacaacataa 273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 11356924 - 11356873
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11356924 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 11356873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1970987 - 1970936
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1970987 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 1970936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 11356791 - 11356740
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11356791 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 11356740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 36350940 - 36350991
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36350940 tataacaggtattcataatatatgttaatagtatttcagatctacaacataa 36350991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 6795113 - 6795158
Alignment:
Q  21 aggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6795113 aggtattcataatatatgttaatagcatttcagatctacaacataa 6795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1690943 - 1690892
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  1690943 tataacaggtattcataatatatgttaataacatttcagatctaaaacataa 1690892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 4724587 - 4724638
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  4724587 tataataggtatttataatatatgttaatagcatttcagatctacaacataa 4724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 1971118 - 1971069
Alignment:
Q  17 taacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  1971118 taacaggtattcataatatatgttaatagcatttcataactacaacataa 1971069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1690812 - 1690761
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  1690812 tataataggtattcataatatatgttaatatcctttcagatctacaacataa 1690761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 36350806 - 36350857
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  36350806 tataacatatattcataatatatgttaataacatttcagatctacaacataa 36350857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 6794975 - 6795025
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacata 65  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  6794975 tataacaaatattcataatatatgttaatagcatttcaaatctacaacata 6795025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 18920416 - 18920365
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||  |||||||||||| |||||||||||||||||||||| |||||||    
T  18920416 tataacaaatattcataatatttgttaatagcatttcagatctataacataa 18920365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 2772704 - 2772653
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2772704 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 2772653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 21169148 - 21169097
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21169148 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 21169097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 22436478 - 22436427
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22436478 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 22436427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26592196 - 26592247
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592196 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 26592247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 36777031 - 36777082
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36777031 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 36777082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 43890011 - 43890062
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43890011 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 43890062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 49792445 - 49792496
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49792445 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 49792496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 51029211 - 51029262
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51029211 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 51029262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 11284794 - 11284743
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11284794 tataacaggtattcataacatatgttaatagcatttcagatctacaacataa 11284743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26592335 - 26592386
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26592335 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 26592386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 47657985 - 47658036
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47657985 tataacatgtattcataatatatgttaatagcatttcagatctacaacataa 47658036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 49792579 - 49792630
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49792579 tataacaggtattcataatatatgttaatagcatttcagatatacaacataa 49792630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 20902119 - 20902170
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  20902119 tataataggtattcataatatatgttaatagcatttcaaatctacaacataa 20902170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 21413043 - 21413094
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  21413043 tataacaagtattcataatatttgttaatagcatttcagatctacaacataa 21413094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 22436614 - 22436563
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  22436614 tataacagttattcataatatatgttaatagcattttagatctacaacataa 22436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 25762297 - 25762246
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  25762297 tataacatgtattcataatatatattaatagcatttcagatctacaacataa 25762246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 47657852 - 47657903
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  47657852 tataagaggtattcataatatatgttaatagcattttagatctacaacataa 47657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 49818156 - 49818207
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  49818156 tataacaagtattcataatatttgttaatagcatttcagatctacaacataa 49818207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26592467 - 26592518
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  26592467 tataacaggtattcataatatatgttaacatcatttaagatctacaacataa 26592518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 36777172 - 36777215
Alignment:
Q  23 gtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  36777172 gtattcataatatatgttaatagcatttcatatctacaacataa 36777215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 45937036 - 45936993
Alignment:
Q  23 gtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  45937036 gtattcataatatatgttaatagcatttcaaatctacaacataa 45936993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 45937178 - 45937127
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||    
T  45937178 tataacatgtatttatattatatgttaatagcatttcagatctacaacataa 45937127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 49818290 - 49818341
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  49818290 tataacaagtattcataatatttgttaataacatttcagatctacaacataa 49818341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 10311839 - 10311790
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacat 64  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  10311839 tataacaagtattcataaaatttgttaatagcatttcagatctacaacat 10311790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 11284660 - 11284605
Alignment:
Q  15 tataacaggtattcataatatatgttaatag----catttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  11284660 tataacaggtattcataatatatgttaatatataacatttcagatctacaacataa 11284605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 10311969 - 10311921
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaaca 63  Q
    ||||||| ||||||||||||| ||||||||| ||||||||| |||||||    
T  10311969 tataacaagtattcataatatttgttaatagtatttcagatttacaaca 10311921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 34472525 - 34472576
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34472525 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 34472576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 42328622 - 42328673
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42328622 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 42328673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 46414844 - 46414895
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46414844 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 46414895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 47760534 - 47760585
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760534 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 47760585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 10053767 - 10053818
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10053767 tataacaggtattcataatatatgttaataacatttcagatctacaacataa 10053818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 11379251 - 11379302
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11379251 tataacatgtattcataatatatgttaatagcatttcagatctacaacataa 11379302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 14631019 - 14630968
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14631019 tataagaggtattcataatatatgttaatagcatttcagatctacaacataa 14630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 30192250 - 30192199
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30192250 tataacaggtattcataatatatgttaataacatttcagatctacaacataa 30192199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 47760398 - 47760449
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47760398 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 47760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 50459250 - 50459301
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50459250 tataacaggtattcataatgtatgttaatagcatttcagatctacaacataa 50459301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 51014854 - 51014803
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51014854 tataacaggtattcataatatatgttaatagcatttcaaatctacaacataa 51014803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 44927186 - 44927136
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacata 65  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44927186 tataacaggtattcataatatatgttaatagcatttcagatatacaacata 44927136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 14631153 - 14631102
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  14631153 tataacaggtattcataatatatgttaatatcatttcagatctacatcataa 14631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 42328740 - 42328791
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  42328740 tataataggtattcataatatatgttaatagcatttcaaatctacaacataa 42328791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 49273169 - 49273118
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  49273169 tataacaggtattcataacatatgttaatagcatttcagatctacaaaataa 49273118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 50459116 - 50459167
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  50459116 tataataggttttcataatatatgttaatagcatttcagatctacaacataa 50459167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 51013786 - 51013837
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  51013786 tataataggtattcataatagatgttaatagcatttcagatctacaacataa 51013837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 51014988 - 51014937
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  51014988 tataacatgtattcataacatatgttaatagcatttcagatctacaacataa 51014937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 10053900 - 10053951
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  10053900 tataacatgtattcataatatatgttaataacatttcagatctacaatataa 10053951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 11379384 - 11379435
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  11379384 tataacagatattcataagatatgttaataacatttcagatctacaacataa 11379435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 51013921 - 51013972
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  51013921 tataacaggtattcataatatatgttaataacatctgagatctacaacataa 51013972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 27186641 - 27186598
Alignment:
Q  23 gtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  27186641 gtattcataatatttgttaatagcatttcagatttacaacataa 27186598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 30192115 - 30192064
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||| |||||||  ||||||||||||||||||||||||    
T  30192115 tataacatgtattcataacatatgttcctagcatttcagatctacaacataa 30192064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 6976543 - 6976492
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6976543 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 6976492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 34522319 - 34522370
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34522319 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 34522370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 10360645 - 10360696
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10360645 tataacaggtattcataatatatgttaatagaatttcagatctacaacataa 10360696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 27131012 - 27131063
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27131012 tataacaggtattcataatatatgttaatagcatttcagatctacaatataa 27131063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 34522186 - 34522237
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34522186 tataacaggtattcataatataagttaataacatttcagatctacaacataa 34522237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 6976408 - 6976357
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  6976408 tataatagatattcataatatatgttaatagcatttaagatctacaacataa 6976357  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 33403481 - 33403430
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  33403481 tataacaagtattcataatatttgttaatagcattttagatctacaacataa 33403430  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 37313002 - 37313053
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  37313002 tataacatgtattcataatatatgttaataacatttcagttctacaacataa 37313053  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 10360788 - 10360831
Alignment:
Q  23 gtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||| |||| || |||||||||||||||||||||    
T  10360788 gtattcataatataagttattaacatttcagatctacaacataa 10360831  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 33403709 - 33403658
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||| || |||||| ||||||||||||||||||| ||||||||||    
T  33403709 tataacaagtactcctaatatttgttaatagcatttcagatttacaacataa 33403658  T

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Target: scaffold0589 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1837 - 1786
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1837 tataacaggtattcataatatatgttaatagcatttcagatctacaccataa 1786  T

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Target: scaffold0589; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1969 - 1918
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1969 tataacaggcattcataatatatgttaatagcatttcagatctacaacataa 1918  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 26484282 - 26484231
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26484282 tataacagatattcataatatatgttaatagcatttcagatctacaacataa 26484231  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19242806 - 19242853
Alignment:
Q  19 acaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19242806 acaggtattcataatatatgttaatagcatttcagatctacaatataa 19242853  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19315990 - 19316037
Alignment:
Q  19 acaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19315990 acaggtattcataatatatgttaatagcatttcagatctacaatataa 19316037  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 26484157 - 26484106
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  26484157 tataacatgtattcataatatatgttaatagcattttagatctacaacataa 26484106  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 38034563 - 38034614
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  38034563 tataacatgtattcataatatatgttaatagcatttcagatctacaatataa 38034614  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 41363422 - 41363371
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  41363422 tataacaggtattcataatatatgttaatagcatttcaaatctacaatataa 41363371  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 42169474 - 42169525
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  42169474 tataacaggtattcataatatatgttaatagcatttaagatctacaaaataa 42169525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 34614686 - 34614645
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34614686 tataacaggtattcataatatatgttaatagcatttcagatc 34614645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 19242668 - 19242719
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| ||||||||||||||||||||||||| | |||| |||||||||||||    
T  19242668 tataataggtattcataatatatgttaatagaaattcaaatctacaacataa 19242719  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 19315852 - 19315903
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||| ||||||||||||||||||||||||| | |||| |||||||||||||    
T  19315852 tataataggtattcataatatatgttaatagaaattcaaatctacaacataa 19315903  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 38034431 - 38034482
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| | |||||||||||||||||||||||||||||||| | |||||||    
T  38034431 tataacatgcattcataatatatgttaatagcatttcagatcaataacataa 38034482  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 12396476 - 12396425
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12396476 tataacaggtattcataatatatgttaatagcatttcagatctacgacataa 12396425  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 34132273 - 34132222
Alignment:
Q  15 tataacaggtattcataatatatgttaatagcatttcagatctacaacataa 66  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  34132273 tataacaagtattcataatatttattaatagcatttcagatctacaacataa 34132222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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