View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276_low_12 (Length: 280)
Name: NF1276_low_12
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 31070485 - 31070289
Alignment:
| Q |
42 |
agagtaggaaatgccattgaggatattgctgcatctaaatacttcctgacttccagccgactgaatcatacgttttctcaaagtccactttaaataataa |
141 |
Q |
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| T |
31070485 |
agagtaggaaatgccattcgggatattgctgcatctaaatacttccagacttccagtcgactgaatcatacgttttctcaaagtccactttaaataataa |
31070386 |
T |
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| Q |
142 |
caactccttattcaattttttcgcttcatcaaccgtcttatttgcaattaatagaccatccaaaatttgactatttttcacaaagttgtatgagtctc |
239 |
Q |
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| T |
31070385 |
caactccttattcatatttttcgcttcatcaaccgcctcatttgcaattaatagactatccaaaatttgactatttttcacaaag-tgtatgagtctc |
31070289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 19043627 - 19043741
Alignment:
| Q |
104 |
gaatcatacgttttctcaaagtccactttaaataataacaactccttattcaattttttcgcttcatcaaccgtcttatttgcaattaatagaccatcca |
203 |
Q |
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|||||||| | ||||||||| |||||||| || || | || || || ||||||||||| ||||| || |||| || ||||||||| | |||||||||| |
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| T |
19043627 |
gaatcataagctttctcaaaatccactttgaacaagagtaattctttcttcaattttttagcttcgtccaccgcctcatttgcaataagaagaccatcca |
19043726 |
T |
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| Q |
204 |
aaatttgactatttt |
218 |
Q |
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|||| || ||||||| |
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| T |
19043727 |
aaatctgtctatttt |
19043741 |
T |
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