View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1276_low_13 (Length: 278)

Name: NF1276_low_13
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1276_low_13
NF1276_low_13
[»] chr1 (6 HSPs)
chr1 (58-236)||(28043611-28043779)
chr1 (65-190)||(49938734-49938863)
chr1 (141-190)||(489257-489306)
chr1 (65-156)||(17603372-17603467)
chr1 (125-190)||(29904802-29904867)
chr1 (134-190)||(2295156-2295212)
[»] chr8 (2 HSPs)
chr8 (65-190)||(26771252-26771381)
chr8 (99-190)||(36963308-36963402)
[»] chr5 (3 HSPs)
chr5 (123-191)||(29815048-29815116)
chr5 (113-190)||(32862630-32862707)
chr5 (113-190)||(42500197-42500273)
[»] chr4 (2 HSPs)
chr4 (141-225)||(13126495-13126579)
chr4 (65-190)||(22030190-22030319)
[»] chr7 (3 HSPs)
chr7 (125-166)||(8960617-8960658)
chr7 (130-190)||(4970746-4970806)
chr7 (65-113)||(4970828-4970876)
[»] chr3 (2 HSPs)
chr3 (141-190)||(5436139-5436188)
chr3 (142-190)||(37795663-37795711)
[»] chr2 (2 HSPs)
chr2 (149-190)||(21828037-21828078)
chr2 (141-225)||(4606992-4607076)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 28043611 - 28043779
Alignment:
Q  58 aagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaacttaaaataacttggaaaagtttttgaaaattgtcgtaagttgttttt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  28043611 aagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaacttaaaa----------aagtttttgaaaattgtcgtaagttgttttt 28043700  T
Q  158 agaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaacataccttagtat 236  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  28043701 agaagtttttctaaacagtcttataaaacttataatggtagataaactcgaataagttaatccaaacagaccttagtat 28043779  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 49938734 - 49938863
Alignment:
Q  65 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttttaga 160  Q
    |||| ||||||| || ||||| |||||| |||| |||||||||||||||   |||||| ||| |||| | |||||||||||||| |||| |||||| | |    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcata 49938833  T
Q  161 agttcttctaaacagtcttacaaaacttat 190  Q
    |||||| | ||||| ||| |||||||||||    
T  49938834 agttctcccaaacaatctcacaaaacttat 49938863  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 489257 - 489306
Alignment:
Q  141 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    |||| ||||||||||| | ||||| |||||||||||||||||||| ||||    
T  489257 tgtcataagttgttttcataagtttttctaaacagtcttacaaaaattat 489306  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 17603467 - 17603372
Alignment:
Q  65 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactt---aaaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttt 156  Q
    |||| |||||||||| ||||| |||||| |||| ||||| ||||||||   ||||||| ||| |||| |||| ||||||||||| |||| ||||||    
T  17603467 tttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaataagttgtaaaaagtttatgaaaattgtcataagctgtttt 17603372  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 29904802 - 29904867
Alignment:
Q  125 aaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    ||||| |||||||||||| | |||| |||||||| |||||||   ||||||||| |||||||||||    
T  29904802 aaaagcttttgaaaattgccataagctgtttttataagttctctcaaacagtctcacaaaacttat 29904867  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 2295156 - 2295212
Alignment:
Q  134 tgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    ||||||||||| |||| |||||| | ||||||| | ||||||||| |||||||||||    
T  2295156 tgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttat 2295212  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 26771252 - 26771381
Alignment:
Q  65 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttggaaaagt-ttttgaaaattgtcgtaagttgtttttaga 160  Q
    |||| |||||||||| ||| | |||||| |||  |||||||||||||||   |||||| ||| |||||  |||||||||||||| |||| |||||| | |    
T  26771252 tttttgtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaattgtcataagctgttttcata 26771351  T
Q  161 agttcttctaaacagtcttacaaaacttat 190  Q
    |||||| | ||||||||| |||||||||||    
T  26771352 agttctcccaaacagtctcacaaaacttat 26771381  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 36963402 - 36963308
Alignment:
Q  99 atattagagaact--taaaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    |||||||||||||  |||||||| ||| |||| | ||||||||||||||  ||| |||||||  ||||||| | ||||||||| |||||||||||    
T  36963402 atattagagaactaataaaataagttgtaaaaagcttttgaaaattgtcaaaagctgtttttgtaagttctcccaaacagtctcacaaaacttat 36963308  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 29815116 - 29815048
Alignment:
Q  123 ggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttata 191  Q
    ||||||| |||||||||||||  |||||||||||   ||||||||||||| ||||| ||||||||||||    
T  29815116 ggaaaagcttttgaaaattgttataagttgttttcgtaagttcttctaaatagtctcacaaaacttata 29815048  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 32862707 - 32862630
Alignment:
Q  113 aaaataacttggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    |||||||  |||||||| || |||||| |||||||||||||||| | || |||||| ||||||| | |||||| ||||    
T  32862707 aaaataagctggaaaagcttatgaaaaatgtcgtaagttgttttcataaattcttccaaacagtgtcacaaaatttat 32862630  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 42500273 - 42500197
Alignment:
Q  113 aaaataacttggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    ||||||| ||| ||||| || ||||||||||||||||||||||  | |||||| || ||| ||||| |||||||||||    
T  42500273 aaaataagttgaaaaagcttatgaaaattgtcgtaagttgtttccataagttc-tccaaagagtctcacaaaacttat 42500197  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 13126579 - 13126495
Alignment:
Q  141 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 225  Q
    |||| |||| |||||||| ||||||||| ||||||||| |||||||||||  | |||||||| ||  ||||||  ||||||||||    
T  13126579 tgtcataagctgtttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatccaaaca 13126495  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 22030190 - 22030319
Alignment:
Q  65 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttg-gaaaagtttttgaaaattgtcgtaagttgtttttaga 160  Q
    |||| |||||||||| ||||| || ||| |||  | |||||||||||||   ||||||| || |||||| |||||||||||||| |||| |||||| | |    
T  22030190 tttttgtatatgctataagttgttcttacaagttaaattagagaacttatgaaaataacctgagaaaagcttttgaaaattgtcataagctgttttcata 22030289  T
Q  161 agttcttctaaacagtcttacaaaacttat 190  Q
    |||||| | ||| || || |||||||||||    
T  22030290 agttctcccaaataggctcacaaaacttat 22030319  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 8960658 - 8960617
Alignment:
Q  125 aaaagtttttgaaaattgtcgtaagttgtttttagaagttct 166  Q
    ||||| |||||||||||||| ||||||||||||| |||||||    
T  8960658 aaaagcttttgaaaattgtcataagttgtttttataagttct 8960617  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 4970806 - 4970746
Alignment:
Q  130 tttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    ||||||||||||| | ||||||||||| | ||||||| | ||||||||| |||| ||||||    
T  4970806 tttttgaaaattgccataagttgttttcataagttctcccaaacagtctcacaagacttat 4970746  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 4970876 - 4970828
Alignment:
Q  65 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta 113  Q
    |||| |||||||||| |||||||||||| |||  |||||||||||||||    
T  4970876 tttttgtatatgctataagttctttttataagatatattagagaactta 4970828  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 5436139 - 5436188
Alignment:
Q  141 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    |||| ||||||||||| ||||||||||| ||||||| | |||||||||||    
T  5436139 tgtcataagttgttttcagaagttcttcaaaacagtgtcacaaaacttat 5436188  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 37795663 - 37795711
Alignment:
Q  142 gtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||    
T  37795663 gtcgtaagttgttttaataagtccttccaaacagtcttacaagacttat 37795711  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 21828037 - 21828078
Alignment:
Q  149 gttgtttttagaagttcttctaaacagtcttacaaaacttat 190  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  21828037 gttgttttcaaaagttcttctaaacagtctcacaaaacttat 21828078  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 4606992 - 4607076
Alignment:
Q  141 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 225  Q
    |||| ||||||||||| | ||||||| | ||| ||||| |||||||||||| |||||| ||| ||  ||||||  ||||||||||    
T  4606992 tgtcataagttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

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