View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1276_low_16 (Length: 269)

Name: NF1276_low_16
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1276_low_16
NF1276_low_16
[»] chr1 (9 HSPs)
chr1 (1-240)||(48656464-48656703)
chr1 (1-237)||(48618200-48618436)
chr1 (5-237)||(48653019-48653251)
chr1 (1-235)||(11547132-11547366)
chr1 (1-237)||(48628765-48629001)
chr1 (167-237)||(48639796-48639866)
chr1 (168-240)||(48667040-48667112)
chr1 (168-237)||(48661448-48661517)
chr1 (182-238)||(48585222-48585278)
[»] chr8 (2 HSPs)
chr8 (1-237)||(27228066-27228302)
chr8 (154-237)||(27223875-27223958)
[»] chr3 (1 HSPs)
chr3 (1-238)||(19665556-19665793)
[»] chr2 (1 HSPs)
chr2 (1-50)||(44044612-44044661)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48656703 - 48656464
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48656703 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 48656604  T
Q  101 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48656603 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 48656504  T
Q  201 atgaagaactagagcctgattttatcgattatatttcgga 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48656503 atgaagaactagagcctgattttatcgattatatttcgga 48656464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 48618200 - 48618436
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 100  Q
    |||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||| |||| |  ||| |||||| ||| |||||| ||     
T  48618200 ctataactatttccacaaactggtacgtttcccttcacaaacagaaccttatattgatgttcaattaccttttcaagttcttaaatacaatgaaatccca 48618299  T
Q  101 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 200  Q
    | | |||| ||||||| || |  || ||| ||||||||  ||||||| |||| |||  |||||||||||||||||| ||| ||||| || || || ||||    
T  48618300 gattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacct 48618399  T
Q  201 atgaagaactagagcctgattttatcgattatatttc 237  Q
    ||||||||||||||| |||||| || || ||||||||    
T  48618400 atgaagaactagagcatgatttcattgactatatttc 48618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 48653251 - 48653019
Alignment:
Q  5 aactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcctgttc 104  Q
    |||||||||||||||||||| | ||||||||||||   |||||||| ||||||||||||||| |||| |||||| |||||||| | |||||| || | |     
T  48653251 aactatttccacaaactggtacgtttcccttcaaatgaagaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagatt 48653152  T
Q  105 ttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatga 204  Q
    |||||||||||| || ||||| ||  |   | ||  ||||| | |||| ||||||||||||||| ||||||| ||| ||||| || || || ||||||||    
T  48653151 ttctgcatccttttagtacatttctatcatttgggacactcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatga 48653052  T
Q  205 agaactagagcctgattttatcgattatatttc 237  Q
    ||||||||||| |||||| || || ||||||||    
T  48653051 agaactagagcatgatttcattgactatatttc 48653019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 11547366 - 11547132
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 100  Q
    ||||||||||||| |||||||||| | ||| ||||   ||| |||||||| ||||||||||||||| |||| |  |||||||||| ||| |||||| ||     
T  11547366 ctataactatttcaacaaactggtacattttcctttggaaaaagaaccttatattgatgttcaattaccttttcaagtccttaaatacaatgaaatccca 11547267  T
Q  101 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 200  Q
    | | |||| ||||||| || | ||||||| ||||||||  ||||||| |||| |||  |||||||||| |||||||  || ||||| || || || ||||    
T  11547266 gattttcttcatccttttagtccatatccatttctagggacactcatcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacct 11547167  T
Q  201 atgaagaactagagcctgattttatcgattatatt 235  Q
    ||||||||||||| | |||||| || || ||||||    
T  11547166 atgaagaactagaacatgatttcattgactatatt 11547132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 48629001 - 48628765
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 100  Q
    |||||||||| |||||||||| || ||||| |||||| |||||||||||| |||||||||||| ||||||| | ||||||||||| ||| |||||| ||     
T  48629001 ctataactatgtccacaaacttgtaccttttccttcagaaacagaaccttatattgatgttcatttgccttttatagtccttaaatacaatgaaatccca 48628902  T
Q  101 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 200  Q
    | | |    ||||||| |||| | |||||  |||||||  |||||||      ||| || || || ||||| |||  ||| |||||||| | ||||||||    
T  48628901 gatttaacacatccttttaatccctatccaattctagggacactcatcacgtcacatatgaataacttgtccaaaatattttgtgtattagcggatacct 48628802  T
Q  201 atgaagaactagagcctgattttatcgattatatttc 237  Q
    ||||||||||||||| |||||| ||||||||| ||||    
T  48628801 atgaagaactagagcatgatttcatcgattatctttc 48628765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 48639866 - 48639796
Alignment:
Q  167 ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttc 237  Q
    ||||||||||  || |||||||| ||||||||||||||||||||||||| |||||| || |||||||||||    
T  48639866 ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttc 48639796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 48667112 - 48667040
Alignment:
Q  168 tgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcgga 240  Q
    |||||||||  || |||||||| |||||||||| ||||||| |||||| |||||| |||||||||||||||||    
T  48667112 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcgga 48667040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 48661517 - 48661448
Alignment:
Q  168 tgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttc 237  Q
    |||||||||  || |||||||| |||||||||| ||||||| |||||| |||||| ||||||||||||||    
T  48661517 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttc 48661448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 48585278 - 48585222
Alignment:
Q  182 tgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcg 238  Q
    |||||||| ||||||||||||||||||||||||| ||| || || ||||||||||||    
T  48585278 tgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttcg 48585222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 27228302 - 27228066
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 100  Q
    |||||||||||| ||||||||||| | ||||||||| ||  ||||||||| |||||||||||||||| ||||| ||||||||||| ||| |||||| ||     
T  27228302 ctataactattttcacaaactggtacgtttcccttcgaatgcagaaccttatattgatgttcaattgtcttctctagtccttaaatacaatgaaatacca 27228203  T
Q  101 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 200  Q
    | | | || |||  || || ||  ||||| ||||| ||  ||||| | || | ||| |||||||| ||||||||||  || |||||||| ||||||||||    
T  27228202 gatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacct 27228103  T
Q  201 atgaagaactagagcctgattttatcgattatatttc 237  Q
    |||| ||| | || | |||||| ||  ||||||||||    
T  27228102 atgaggaattggaacatgatttcataaattatatttc 27228066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 27223958 - 27223875
Alignment:
Q  154 acaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttc 237  Q
    |||||||||||| ||||||||||  || |||||||| || ||||| ||||| |||||||| | |||||| ||||| ||| ||||    
T  27223958 acaaattaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttc 27223875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19665556 - 19665793
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcct 100  Q
    |||||||||||| || |||  ||| | |||||||||  ||| |||||||| |||||||| |||||| ||||  ||||  |||||||| |  ||||| ||     
T  19665556 ctataactattttcataaaacggtacgtttcccttcggaaaaagaaccttatattgatgctcaattacctttcgtagctcttaaacataacgaaataccg 19665655  T
Q  101 gttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacct 200  Q
    | | |||| ||||||| || || |||| | ||||||||  |||||||||||| |||  |||||||||| |||||||  || |||||||| |||||||  |    
T  19665656 gattttctacatccttttagtaaatattcatttctagggacactcattttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagtt 19665755  T
Q  201 atgaagaactagagcctgattttatcgattatatttcg 238  Q
    |||| |||||||||| |||||  ||||| |||||||||    
T  19665756 atgatgaactagagcatgattacatcgactatatttcg 19665793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44044612 - 44044661
Alignment:
Q  1 ctataactatttccacaaactggtgcctttcccttcaaaaacagaacctt 50  Q
    |||||||||||| |||||||||||   |||||||||| ||||||||||||    
T  44044612 ctataactattttcacaaactggtatgtttcccttcagaaacagaacctt 44044661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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