View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276_low_18 (Length: 257)
Name: NF1276_low_18
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 3319003 - 3318788
Alignment:
| Q |
30 |
ttatatttctagcatcattccaaattctctttaccatttacttttccttttctccatttttagctcacaccgctatgattttcacatgcaatannnnnnn |
129 |
Q |
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| T |
3319003 |
ttatatttctagcatcattccaaattcactttaccatttacttttccttttctccatttttagctcacaccgctatgattttcacatgcaatattttttt |
3318904 |
T |
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| Q |
130 |
ngggtggatttttcacatgcaattttgtaccgctaaatctctgactttttgtaaccacctctccaccctttcaataaattggcatcttcctaatgcttta |
229 |
Q |
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| T |
3318903 |
tgggtggatttttcacatgcaattttgtaccgctaaatctctgactttttgtaaccacctctccaccctttcaataaattggcatcttcctaatgcttta |
3318804 |
T |
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| Q |
230 |
acctaatttctagtat |
245 |
Q |
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|||||||||||||||| |
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| T |
3318803 |
acctaatttctagtat |
3318788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 3311340 - 3311256
Alignment:
| Q |
36 |
ttctagcatcattccaaattctctttaccatttacttttccttttctccatttttagctcacaccgctatgattttcacatgcaat |
121 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3311340 |
ttctagcatcattccaaattctctttaccatttgattttccttt-ctccatttttagctcacaccgctatgattttcacatgcaat |
3311256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 3311116 - 3311041
Alignment:
| Q |
162 |
ctaaatctctgactttttgtaaccacctctccaccctttcaataaattggcatcttcctaatg-ctttaacctaattt |
238 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
3311116 |
ctaaatctctaactttttgtaaccacctctccacccttt--tccaattggcatcttcctaatgcctttaacctaattt |
3311041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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