View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1276_low_2 (Length: 519)

Name: NF1276_low_2
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1276_low_2
NF1276_low_2
[»] chr7 (15 HSPs)
chr7 (86-427)||(29922102-29922437)
chr7 (110-260)||(29476473-29476623)
chr7 (87-217)||(29881086-29881216)
chr7 (116-264)||(29106591-29106739)
chr7 (85-204)||(29920151-29920270)
chr7 (86-260)||(29454212-29454386)
chr7 (116-215)||(29859286-29859385)
chr7 (86-209)||(29899206-29899329)
chr7 (86-215)||(29867071-29867200)
chr7 (86-215)||(29895298-29895427)
chr7 (114-214)||(29431135-29431235)
chr7 (118-177)||(18953046-18953105)
chr7 (118-177)||(18983093-18983152)
chr7 (118-177)||(18997739-18997798)
chr7 (111-209)||(29885086-29885184)
[»] chr4 (9 HSPs)
chr4 (11-90)||(12589658-12589737)
chr4 (11-90)||(46764766-46764845)
chr4 (11-90)||(25655095-25655173)
chr4 (11-90)||(11680858-11680937)
chr4 (11-90)||(11689137-11689216)
chr4 (86-209)||(1686394-1686517)
chr4 (88-191)||(3557582-3557685)
chr4 (124-206)||(3561105-3561187)
chr4 (88-209)||(3565582-3565703)
[»] chr6 (2 HSPs)
chr6 (11-90)||(931438-931517)
chr6 (11-90)||(10607774-10607853)
[»] chr1 (6 HSPs)
chr1 (86-214)||(4366604-4366732)
chr1 (116-190)||(4570780-4570854)
chr1 (119-209)||(21855525-21855615)
chr1 (124-180)||(4016919-4016974)
chr1 (118-201)||(10218825-10218908)
chr1 (86-191)||(39379170-39379275)
[»] chr5 (1 HSPs)
chr5 (119-209)||(24331041-24331131)
[»] chr3 (1 HSPs)
chr3 (86-206)||(3625575-3625695)
[»] scaffold0242 (2 HSPs)
scaffold0242 (110-260)||(13863-14013)
scaffold0242 (110-260)||(22698-22848)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 86 - 427
Target Start/End: Original strand, 29922102 - 29922437
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29922102 cccaacacaccaacggttggttctgcagatggcacttcatcaa------gaggcaacagatattgattgtatgtctccgtccctaaatcaagagaaacga 29922195  T
Q  186 taacaaaatgttcaactgtaatattcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgccacttacgtaaacaccatcacacat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922196 taacaaaatgttcaactgtaatattcttaacacgatagggaaggtcgttgtggatagccaaccagttaaaagtgccacttacgtaaacaccatcacacat 29922295  T
Q  286 acaatgttcactatgaatatgatcactatagtccaaacgaagaggaaccaccgggaaaaatgcaatatctctccaaacatgatcacccgaacctagaatc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922296 acaatgttcactatgaatatgatcactatagtccaaacgaagaggaaccaccgggaaaaatgcaatatctctccaaacatgatcacccgaacctagaatc 29922395  T
Q  386 tttatatttctatttccttttagtcgattgtaacggaacgcc 427  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  29922396 tttatatttctatttccttttagtctattgtaacggaacgcc 29922437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 29476473 - 29476623
Alignment:
Q  110 gcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 209  Q
    |||||||||| |||||||||| |||||||||   | ||||||||||||||||| || |||||||| || || || |||||||| || |||||| ||| ||    
T  29476473 gcagatggcatttcatcaaaatcacgaggcagacggtattgattgtatgtctcagttcctaaatcgagtgaaacaataacaaactgctcaactctaagat 29476572  T
Q  210 tcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 260  Q
    |||||| |  ||||  || ||||||||| ||||||||||| |||| |||||    
T  29476573 tcttaatatcatagtcaaagtcattgtgaatagccaaccaattaagagtgc 29476623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 29881216 - 29881086
Alignment:
Q  87 ccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgat 186  Q
    |||||||||||||  |||||  ||||| |||||| ||||||||||   ||||||   ||||||||||||||||||| ||||| |||||||| || || ||    
T  29881216 ccaacacaccaacaattggtcgtgcaggtggcacctcatcaaaactcggaggcagtcgatattgattgtatgtctcagtccccaaatcaagtgaaacaat 29881117  T
Q  187 aacaaaatgttcaactgtaatattcttaaca 217  Q
    |||||| || ||||| ||||||| |||||||    
T  29881116 aacaaattggtcaacagtaatatccttaaca 29881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 29106739 - 29106591
Alignment:
Q  116 ggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatattcttaa 215  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||| |||   ||||||| || || |||||||| ||  |||||||||||| || ||    
T  29106739 ggcacttcatcaaacccacgaggcaacttgtattgattgtatgtctccatcctccaatcaagtgaaacaataacaaattgaccaactgtaatatcctcaa 29106640  T
Q  216 cacgatagggaaggtcattgtggatagccaaccagttaaaagtgccact 264  Q
     |  |||    |||  |||||| |||||||||||||||| |||||||||    
T  29106639 aattataatcgaggctattgtgaatagccaaccagttaagagtgccact 29106591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 29920151 - 29920270
Alignment:
Q  85 tcccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacg 184  Q
    ||||||||||||||  ||||||||| ||  ||||||||||||||| ||||| ||||  | ||| |||| ||| ||||| ||||| ||||  ||||| ||     
T  29920151 tcccaacacaccaagagttggttctacaagtggcacttcatcaaatccacggggcagtaaatactgatggtaggtctctgtccccaaatggagagaaaca 29920250  T
Q  185 ataacaaaatgttcaactgt 204  Q
    |||||||| |||||||||||    
T  29920251 ataacaaattgttcaactgt 29920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 29454212 - 29454386
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    ||||| |||||||| |||||  || ||| |||||| ||||||||| ||||||||||  | || | |||||| ||||| ||||| |||||||| || |  |    
T  29454212 cccaaaacaccaaccgttggagcttcaggtggcacctcatcaaaatcacgaggcaattggtacttattgtacgtctcagtccccaaatcaagtgaaataa 29454311  T
Q  186 taacaaaatgttcaactgtaatattcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 260  Q
    ||||||| || |||||||| |||||||||  |  |||| | | || |||||| ||||||||||| |||| |||||    
T  29454312 taacaaactgctcaactgtgatattcttactattatagtgcaagtgattgtgaatagccaaccaattaagagtgc 29454386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 29859385 - 29859286
Alignment:
Q  116 ggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatattcttaa 215  Q
    ||||| |||||||| ||||||||||| |  |||||||||||||| ||  |||| |||||||| || || |||||||| ||||| || ||||||| |||||    
T  29859385 ggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcactccccaaatcaagtgaaacaataacaaattgttcgacagtaatatccttaa 29859286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 29899329 - 29899206
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    |||||||||||||  ||||| ||  |||| |||||||||||||| ||| |||||||||  || || || |||||||||||| | |||||||| || || |    
T  29899329 cccaacacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaa 29899230  T
Q  186 taacaaaatgttcaactgtaatat 209  Q
    ||||||| ||  ||||||| ||||    
T  29899229 taacaaattgcccaactgtgatat 29899206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 29867200 - 29867071
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    ||||||||||||||  | || | |||||| ||||| ||||||||||   ||||||   | |||||||||||| |||| ||||| |||||||| || || |    
T  29867200 cccaacacaccaacaataggatatgcagacggcacctcatcaaaacttggaggcagtcggtattgattgtatttctcagtccccaaatcaagtgaaacaa 29867101  T
Q  186 taacaaaatgttcaactgtaatattcttaa 215  Q
    ||||||| || ||||| ||||||| |||||    
T  29867100 taacaaactggtcaacagtaatatccttaa 29867071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 29895427 - 29895298
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    ||||| |||| ||| ||||||| || ||  ||||| |||||||||||  |||||| ||| ||||||||||| |||||||| || |  ||||| || || |    
T  29895427 cccaagacactaaccgttggttgtgtagggggcacctcatcaaaacccagaggcagcaggtattgattgtaagtctccgttcccagctcaagcgaaacaa 29895328  T
Q  186 taacaaaatgttcaactgtaatattcttaa 215  Q
    ||||||| || |||||| ||| ||||||||    
T  29895327 taacaaattgctcaactctaagattcttaa 29895298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 29431135 - 29431235
Alignment:
Q  114 atggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatattctt 213  Q
    ||||||| ||||||||| ||||||||||||  || | ||| |||||||| ||||| |||||||| || |  |||||||| || |||| |||||||| |||    
T  29431135 atggcacctcatcaaaatcacgaggcaacaagtacttattatatgtctcagtccccaaatcaagcgaaagaataacaaactgctcaattgtaatatcctt 29431234  T
Q  214 a 214  Q
    |    
T  29431235 a 29431235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 18953046 - 18953105
Alignment:
Q  118 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaag 177  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||  ||||||||    
T  18953046 cacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaag 18953105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 18983093 - 18983152
Alignment:
Q  118 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaag 177  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||  ||||||||    
T  18983093 cacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaag 18983152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 18997739 - 18997798
Alignment:
Q  118 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaag 177  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||  ||||||||    
T  18997739 cacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaag 18997798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 29885184 - 29885086
Alignment:
Q  111 cagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 209  Q
    |||| |||||||||||||| ||| |||||||||  || || || |||||||||||| | |||||||| || || |||||||| ||  ||||||| ||||    
T  29885184 cagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataacaaattgcccaactgtgatat 29885086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 12589658 - 12589737
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12589658 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaa 12589737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 46764845 - 46764766
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46764845 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaa 46764766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 25655095 - 25655173
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  25655095 atactactggatttgttcatttgtattccatgttcca-gttccttcatgggtccacttgttccccactctttcttcccaa 25655173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 11680937 - 11680858
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  11680937 atactatttgatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaa 11680858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 11689216 - 11689137
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  11689216 atactatttgatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaa 11689137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 1686394 - 1686517
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    |||||||||||||| ||||| |||  |   ||||| ||| |||||||  |||||||| ||||||||||||||||||| ||||| |||| ||| || || |    
T  1686394 cccaacacaccaacagttggctctataagcggcacctcagcaaaaccctgaggcaaccgatattgattgtatgtctcagtccccaaattaagtgaaacaa 1686493  T
Q  186 taacaaaatgttcaactgtaatat 209  Q
    ||||||  |||||||| |||||||    
T  1686494 taacaatctgttcaacagtaatat 1686517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 3557685 - 3557582
Alignment:
Q  88 caacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgata 187  Q
    |||||||||||||||||| ||  |||  ||||  ||||||||||| ||||||||| ||||||| ||||||| ||| ||||| |||||||| || || |||    
T  3557685 caacacaccaacggttggctcctcagtcggcatctcatcaaaaccccgaggcaaccgatattggttgtatgactcagtccccaaatcaagtgaaacaata 3557586  T
Q  188 acaa 191  Q
    ||||    
T  3557585 acaa 3557582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 3561105 - 3561187
Alignment:
Q  124 atcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaa 206  Q
    ||||||||| |||||||||| |||||||||||||||||| || || | |||||| || || |||||||| || ||||||||||    
T  3561105 atcaaaaccccgaggcaacaaatattgattgtatgtctcagttcccagatcaagcgaaacaataacaaactgctcaactgtaa 3561187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 3565703 - 3565582
Alignment:
Q  88 caacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgata 187  Q
    |||||||||||| ||||| ||  |||  || || |||||||||||  |||||||| ||||||| ||||||| ||| |||||||||||||| || || |||    
T  3565703 caacacaccaacagttggctcctcagtcggaacctcatcaaaacccagaggcaaccgatattgtttgtatgactcagtccctaaatcaagtgaaacaata 3565604  T
Q  188 acaaaatgttcaactgtaatat 209  Q
    ||||  || ||||| |||||||    
T  3565603 acaatctgctcaacagtaatat 3565582  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 931517 - 931438
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  931517 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaa 931438  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 10607774 - 10607853
Alignment:
Q  11 atactactggatttgttcatttgtattccatgttccatgttccttcatgggtccgcttgttccccactctttcttcccaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  10607774 atactactggatttgttcatttgtattccatgttccatgttccttcatggatccacttgttccccactctttcttcccaa 10607853  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 4366604 - 4366732
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    |||||||||||||| |||||||| | || ||||||||| |||||||||||||||| ||  ||||||||||||||||| || || | |||||| || || |    
T  4366604 cccaacacaccaactgttggttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatcaagcgaaacaa 4366703  T
Q  186 taacaaaatgttcaactgtaatattctta 214  Q
    ||||||| || ||||| ||||||||||||    
T  4366704 taacaaattgctcaacggtaatattctta 4366732  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 4570854 - 4570780
Alignment:
Q  116 ggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataaca 190  Q
    |||||||||||||  |||||||||| ||  ||||||||||||||||||||| | ||||||||||| || ||||||    
T  4570854 ggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataaca 4570780  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 21855525 - 21855615
Alignment:
Q  119 acttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 209  Q
    ||||||||||||||| ||||||  |  ||||||||||||||||||||| | ||||||||||| || || ||||| || ||||| |||||||    
T  21855525 acttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaatat 21855615  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 4016919 - 4016974
Alignment:
Q  124 atcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagaga 180  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  4016919 atcaaaaccacgaggcaccatgtattgattgtatgtctccgtccc-aaatcaagaga 4016974  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 10218908 - 10218825
Alignment:
Q  118 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaac 201  Q
    ||||| |||||||||||  |||| ||  ||||||||||||||||||||| | ||||||||||| || |||||| | ||||||||    
T  10218908 cacttgatcaaaaccacagggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataacagagtgttcaac 10218825  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 39379170 - 39379275
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    |||||||||||||   |||| |||||||| || || ||||||||||| | ||||||| |||| || |||||||| || ||||| |||||||| || || |    
T  39379170 cccaacacaccaaaacttggctctgcagacggaacctcatcaaaaccccaaggcaaccgatactggttgtatgtttcagtccccaaatcaagtgaaacaa 39379269  T
Q  186 taacaa 191  Q
    ||||||    
T  39379270 taacaa 39379275  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 24331041 - 24331131
Alignment:
Q  119 acttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 209  Q
    ||||||||||||||| ||||||  |  ||||||||||||||||||||| | ||||||||||| || || ||||| || ||||| |||||||    
T  24331041 acttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaatat 24331131  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 3625695 - 3625575
Alignment:
Q  86 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 185  Q
    ||||||||||||||  ||||||||  ||  ||||| | |||||| |||||||||| |  ||| |||||||||||||| ||||| |||||||| || || |    
T  3625695 cccaacacaccaacatttggttctataggaggcaccttatcaaatccacgaggcagccaatagtgattgtatgtctcagtccccaaatcaagtgaaacaa 3625596  T
Q  186 taacaaaatgttcaactgtaa 206  Q
    ||||||| || ||||| ||||    
T  3625595 taacaaattgctcaacagtaa 3625575  T

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Target: scaffold0242 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 13863 - 14013
Alignment:
Q  110 gcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 209  Q
    |||||||||| ||||| |||| |||||||||   | || |||||||||||||| || |  ||||| || || || |||||||| || |||||| ||| ||    
T  13863 gcagatggcatttcatgaaaatcacgaggcagacggtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaactttaagat 13962  T
Q  210 tcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 260  Q
    |||||| |  ||||  || ||||||||| | ||||||||| |||| |||||    
T  13963 tcttaatatcatagtcaaagtcattgtgaacagccaaccaattaagagtgc 14013  T

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Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 22698 - 22848
Alignment:
Q  110 gcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 209  Q
    |||||||||| ||||| |||| |||||||||   | || |||||||||||||| || |  ||||| || || || |||||||| || |||||| ||| ||    
T  22698 gcagatggcatttcatgaaaatcacgaggcagacggtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaactttaagat 22797  T
Q  210 tcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 260  Q
    |||||| |  ||||  || ||||||||| | ||||||||| |||| |||||    
T  22798 tcttaatatcatagtcaaagtcattgtgaacagccaaccaattaagagtgc 22848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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