View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276_low_5 (Length: 370)
Name: NF1276_low_5
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 34 - 356
Target Start/End: Complemental strand, 38592622 - 38592300
Alignment:
| Q |
34 |
tcatgtaggaaaaatgattttattgccgtgtatcatatcaatatgtataatgacaacgttttatattcatgaaaaagaaaatacaacattttatgacttt |
133 |
Q |
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| T |
38592622 |
tcatgtaggaaaaatgattttattgccgtgtatcatatcaatatgtataattacaacgttttatattcatgaaaaagaaaatacaacattttatgacttt |
38592523 |
T |
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| Q |
134 |
acaagatcaatatttaaagataaacaaaattttcgtagcgcaaaataaattgtagcataaattgcaaacaatatttcaattgtgaatcggtggcttcctt |
233 |
Q |
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| T |
38592522 |
acaagatcaatatttaaagataaacaaaattttcgtagcgcaaaataaattgtagcataaattgcaaacaatatttcaattgtgaatcggtggcttcctt |
38592423 |
T |
|
| Q |
234 |
ctagctggagtgtaatccattgaaaatacttcatctcccacattatgttcttcttttgccttaaacatatgatcttcctcattattatgagtattactcg |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38592422 |
ctagctggagtgtaatccattgaaaatacttcatctcccacattatgttcttcttttgccttaaacatatgatcttccttattattatgagtattactcg |
38592323 |
T |
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| Q |
334 |
ttacatcattgcttttttccttc |
356 |
Q |
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||||||||||||||||||||||| |
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| T |
38592322 |
ttacatcattgcttttttccttc |
38592300 |
T |
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