View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276_low_9 (Length: 295)
Name: NF1276_low_9
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276_low_9 |
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| [»] scaffold0189 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 33211875 - 33211971
Alignment:
| Q |
55 |
ctctgatgcacagacgcggctgagatccgccgtgtcgccgtctccaacgcggttccgacacagacgcgcgtacgacatgcgtacgattcgcgtcaga |
151 |
Q |
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| T |
33211875 |
ctctgatgcacagacgcggctgagatctgccgtgttgccgtctccaacgcggttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcaga |
33211971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 40174521 - 40174414
Alignment:
| Q |
54 |
cctctgatgcacagacgcggctgagatccgccgtgtcgccgtctccaacgcggttccgacacagacgcgcgtacgacatgcgtacgattcgcgtcagatg |
153 |
Q |
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| T |
40174521 |
cctctgatgcacagacgcggcagagatccgccgtgtcaccgtctctgatgcggttccgacacggacgcgcgtacgacacacgtacgattcgcgtcagacg |
40174422 |
T |
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| Q |
154 |
cggatatt |
161 |
Q |
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|||||||| |
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| T |
40174421 |
cggatatt |
40174414 |
T |
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Target: scaffold0189 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 28431 - 28323
Alignment:
| Q |
53 |
acctctgatgcacagacgcggctgagatccgccgtgtcgccgtctccaacgcggttccgacacagacgcgcgtacgacatgcgtacgattcgcgtcagat |
152 |
Q |
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| T |
28431 |
acctgtgatgcacagacgcggctgagattcgccgtgccgccgtctccgacgcggttccgacatggacgcacgtacgacacgcgtacgattcgcgtcagac |
28332 |
T |
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| Q |
153 |
gcggatatt |
161 |
Q |
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| T |
28331 |
gcggatatt |
28323 |
T |
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Target: scaffold0016 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 60455 - 60352
Alignment:
| Q |
55 |
ctctgatgcacagacgcggctgagatccgccgtgtcgccgtctccaacgcggttccgacacagacgcgcgtacgacatgcgtacgattcgcgtcagatgc |
154 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||| || |
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| T |
60455 |
ctctgatgcacggacgcggccgagatctgccgtgtcgccgtctccgatgcggttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacgc |
60356 |
T |
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| Q |
155 |
ggat |
158 |
Q |
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|||| |
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| T |
60355 |
ggat |
60352 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 8005437 - 8005361
Alignment:
| Q |
53 |
acctctgatgcacagacgcggctgagatccgccgtgtcgccgtctccaacgcggttccgacacagacgcgcgtacga |
129 |
Q |
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| T |
8005437 |
acctctgatgcacagacgcggctgagatccgccgtgccaccgtctccgacgcggttccgacacggacgcgcgtacga |
8005361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 31740200 - 31740170
Alignment:
| Q |
180 |
gatgtttgaattacactctctcccctcttat |
210 |
Q |
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| T |
31740200 |
gatgtttgaattacactctctcccctcttat |
31740170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 38261684 - 38261610
Alignment:
| Q |
55 |
ctctgatgcacagacgcggctgagatccgccgtgtcgccgtctccaacgcggttccgacacagacgcgcgtacga |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||| |||||||| |
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| T |
38261684 |
ctctgatgcacagacgcggctgagatccgccgtgtcgacgtgtccggcgcggttccgacacggacatgcgtacga |
38261610 |
T |
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