View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_high_13 (Length: 251)
Name: NF12770_high_13
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 29449417 - 29449653
Alignment:
| Q |
1 |
tgatgtgaagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttc |
100 |
Q |
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| T |
29449417 |
tgatgtgaagctgaaaacgaatgctcaaattgtttctagtggtttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttc |
29449516 |
T |
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| Q |
101 |
tggaatggtgtgacatatatcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtga |
200 |
Q |
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| T |
29449517 |
tggaatggtgtgac----atcacacttctctcttgtgtaaaaatctcacacgaggggatccattccccgtggaattgtgaatggggatgacctttggtga |
29449612 |
T |
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| Q |
201 |
aagaaaaggccaacagaagtgtgacaaagatctcatctgtg |
241 |
Q |
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| T |
29449613 |
aagaaaaggccaatagaagtgtgacaaagatctcatctgtg |
29449653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 29462304 - 29462490
Alignment:
| Q |
43 |
tttgtgggaaggattgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatatatcacacttctctcttgtgtaaaa |
142 |
Q |
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| T |
29462304 |
tttgtgggaaggattgaattgataaggaatgtagctccacacatttgtatctctcttctgaaatggtatgacat----ca-acttctctctcgtgtaaaa |
29462398 |
T |
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| Q |
143 |
atctcacacgaggggatccattccccatggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaagatctca |
235 |
Q |
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| T |
29462399 |
atctcacatgaggggatccgtttccggtggaattatgaatggggatgacctatggtgaaag-aaaggcctacaaaagtgtgacaaagatctca |
29462490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 9363628 - 9363451
Alignment:
| Q |
56 |
ttgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatatatcacacttctctcttgtgtaaaaatctcacacgagg |
155 |
Q |
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| T |
9363628 |
ttgaattgataaggaatgtagctccatccatttgtatctctcttcttgagtggtgtgacac----cacacttctctcatgt--aaaaatctcacatgagg |
9363535 |
T |
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| Q |
156 |
ggatccattccc-----catggaattgtgaatggggatgacctttggtgaaagaaaaggccaacagaagtgtgacaaagatctca |
235 |
Q |
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| T |
9363534 |
ggatccattcccggtggaatcgaatcgtgaatggggatgacctatggtggaag-aaaggcctactgaagtgccacaaagatctca |
9363451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 9069069 - 9069117
Alignment:
| Q |
40 |
tggtttgtgggaaggattgaattgataaggaatgtagctccacccattt |
88 |
Q |
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| T |
9069069 |
tggtttgtgggaaaggttgaattgataaagaatgaagctgcacccattt |
9069117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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