View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12770_high_2 (Length: 551)

Name: NF12770_high_2
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12770_high_2
NF12770_high_2
[»] chr4 (34 HSPs)
chr4 (18-541)||(13855989-13856511)
chr4 (201-541)||(13867711-13868046)
chr4 (18-188)||(13868028-13868196)
chr4 (305-512)||(49261739-49261950)
chr4 (316-512)||(31936280-31936475)
chr4 (18-149)||(13842720-13842850)
chr4 (389-541)||(372703-372854)
chr4 (334-540)||(2777926-2778135)
chr4 (337-470)||(49065549-49065683)
chr4 (314-406)||(42118906-42118999)
chr4 (323-509)||(14990266-14990453)
chr4 (285-406)||(37694574-37694696)
chr4 (337-471)||(27761127-27761262)
chr4 (334-442)||(9242945-9243054)
chr4 (388-512)||(42039021-42039145)
chr4 (389-472)||(32935692-32935775)
chr4 (384-495)||(38131441-38131552)
chr4 (268-329)||(372636-372697)
chr4 (384-473)||(24608149-24608238)
chr4 (270-347)||(40962765-40962842)
chr4 (448-512)||(18414132-18414196)
chr4 (382-473)||(40962688-40962780)
chr4 (335-397)||(8932527-8932589)
chr4 (382-472)||(21713161-21713251)
chr4 (162-219)||(13842631-13842688)
chr4 (418-495)||(31823045-31823122)
chr4 (313-400)||(33985517-33985605)
chr4 (334-365)||(2777927-2777958)
chr4 (334-365)||(37694615-37694646)
chr4 (315-443)||(34939383-34939513)
chr4 (331-365)||(42118927-42118961)
chr4 (268-301)||(32303799-32303832)
chr4 (376-443)||(43502309-43502377)
chr4 (382-425)||(52789396-52789440)
[»] chr3 (23 HSPs)
chr3 (270-512)||(50561332-50561574)
chr3 (323-473)||(6755710-6755861)
chr3 (268-473)||(25745133-25745339)
chr3 (339-495)||(39415302-39415459)
chr3 (269-366)||(50561675-50561772)
chr3 (384-495)||(25574829-25574940)
chr3 (337-495)||(48086797-48086956)
chr3 (331-473)||(6462944-6463087)
chr3 (460-541)||(11161893-11161974)
chr3 (331-512)||(47560329-47560515)
chr3 (337-406)||(49742161-49742231)
chr3 (314-406)||(49501594-49501687)
chr3 (382-492)||(32211124-32211235)
chr3 (334-365)||(36182823-36182854)
chr3 (337-406)||(23029602-23029672)
chr3 (498-540)||(25745036-25745078)
chr3 (331-365)||(47560477-47560511)
chr3 (334-363)||(23029602-23029631)
chr3 (338-403)||(33448598-33448663)
chr3 (334-363)||(49742202-49742231)
chr3 (332-365)||(55480394-55480427)
chr3 (389-445)||(8628438-8628493)
chr3 (331-363)||(14995140-14995172)
[»] chr8 (12 HSPs)
chr8 (267-512)||(43835281-43835527)
chr8 (337-495)||(34471566-34471724)
chr8 (382-482)||(3964010-3964109)
chr8 (340-443)||(23542768-23542872)
chr8 (267-469)||(1931273-1931478)
chr8 (314-404)||(1217723-1217814)
chr8 (314-422)||(15743234-15743344)
chr8 (314-425)||(35161539-35161651)
chr8 (314-406)||(4759270-4759363)
chr8 (334-443)||(5913140-5913251)
chr8 (314-425)||(4322628-4322741)
chr8 (384-472)||(43693561-43693649)
[»] chr1 (30 HSPs)
chr1 (267-473)||(5770557-5770764)
chr1 (267-473)||(5766818-5767025)
chr1 (322-472)||(23602952-23603105)
chr1 (337-495)||(41871687-41871846)
chr1 (379-495)||(49597190-49597306)
chr1 (418-540)||(9343533-9343656)
chr1 (283-360)||(37708004-37708081)
chr1 (382-495)||(48566758-48566871)
chr1 (339-470)||(21482862-21482994)
chr1 (376-470)||(3660175-3660269)
chr1 (382-470)||(18843976-18844064)
chr1 (314-425)||(12926759-12926872)
chr1 (339-473)||(47983638-47983773)
chr1 (320-473)||(3781856-3782009)
chr1 (382-492)||(11012136-11012246)
chr1 (334-425)||(33686586-33686679)
chr1 (338-402)||(20447122-20447186)
chr1 (338-402)||(20532885-20532949)
chr1 (270-403)||(22605326-22605460)
chr1 (323-361)||(37313732-37313770)
chr1 (382-472)||(39222703-39222793)
chr1 (382-427)||(46923778-46923823)
chr1 (270-361)||(1671434-1671525)
chr1 (266-301)||(42294620-42294655)
chr1 (331-365)||(3781871-3781905)
chr1 (334-366)||(1671429-1671461)
chr1 (334-366)||(5770665-5770697)
chr1 (334-405)||(7014837-7014909)
chr1 (270-342)||(32306477-32306549)
chr1 (411-495)||(46178670-46178754)
[»] chr2 (14 HSPs)
chr2 (337-512)||(29908457-29908633)
chr2 (319-427)||(6903756-6903865)
chr2 (337-472)||(29132631-29132767)
chr2 (314-406)||(4616700-4616793)
chr2 (384-512)||(13785046-13785174)
chr2 (411-508)||(24937357-24937454)
chr2 (314-443)||(5814559-5814691)
chr2 (338-443)||(5290724-5290831)
chr2 (314-443)||(41192407-41192538)
chr2 (344-405)||(37057161-37057223)
chr2 (411-512)||(25686009-25686110)
chr2 (383-427)||(12874244-12874288)
chr2 (313-443)||(21083699-21083831)
chr2 (497-540)||(8556374-8556417)
[»] chr7 (19 HSPs)
chr7 (315-443)||(8260812-8260942)
chr7 (324-442)||(29714241-29714359)
chr7 (382-495)||(41219348-41219461)
chr7 (337-495)||(18239380-18239539)
chr7 (376-512)||(35126192-35126328)
chr7 (314-443)||(4035176-4035307)
chr7 (320-406)||(39283927-39284014)
chr7 (337-443)||(27874050-27874157)
chr7 (305-395)||(2914719-2914809)
chr7 (315-365)||(33802907-33802957)
chr7 (382-472)||(39476529-39476619)
chr7 (377-445)||(34354412-34354480)
chr7 (376-443)||(37524182-37524249)
chr7 (382-472)||(21153755-21153845)
chr7 (334-365)||(33802927-33802958)
chr7 (335-365)||(2912215-2912245)
chr7 (377-406)||(40144845-40144874)
chr7 (334-366)||(2912214-2912246)
chr7 (498-541)||(8725779-8725823)
[»] chr5 (19 HSPs)
chr5 (323-512)||(11125740-11125930)
chr5 (381-512)||(19043885-19044016)
chr5 (349-472)||(20202605-20202728)
chr5 (382-472)||(6427284-6427374)
chr5 (382-495)||(41758685-41758798)
chr5 (370-474)||(2599788-2599892)
chr5 (318-472)||(1172932-1173087)
chr5 (331-425)||(1081930-1082026)
chr5 (334-469)||(16100832-16100968)
chr5 (337-443)||(7083997-7084104)
chr5 (382-512)||(25898635-25898765)
chr5 (384-472)||(10532795-10532883)
chr5 (334-406)||(12143998-12144071)
chr5 (314-406)||(40034064-40034157)
chr5 (334-443)||(2786684-2786795)
chr5 (319-365)||(24531032-24531078)
chr5 (329-366)||(14410768-14410805)
chr5 (460-541)||(23227292-23227373)
chr5 (498-541)||(19749479-19749523)
[»] chr6 (8 HSPs)
chr6 (334-482)||(23912236-23912385)
chr6 (297-409)||(13312501-13312614)
chr6 (384-495)||(319227-319338)
chr6 (268-409)||(1077518-1077659)
chr6 (313-406)||(30634177-30634271)
chr6 (314-443)||(11598951-11599082)
chr6 (376-408)||(9521407-9521439)
chr6 (389-469)||(17399041-17399121)
[»] scaffold0223 (2 HSPs)
scaffold0223 (383-512)||(16038-16168)
scaffold0223 (305-361)||(16159-16215)
[»] scaffold0500 (1 HSPs)
scaffold0500 (460-541)||(1250-1331)
[»] scaffold0861 (1 HSPs)
scaffold0861 (385-472)||(3721-3808)
[»] scaffold0217 (1 HSPs)
scaffold0217 (328-470)||(25544-25688)
[»] scaffold0051 (1 HSPs)
scaffold0051 (382-443)||(20094-20156)
[»] scaffold0753 (1 HSPs)
scaffold0753 (382-470)||(3999-4088)
[»] scaffold0007 (1 HSPs)
scaffold0007 (331-363)||(232439-232471)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 13856511 - 13855989
Alignment:
Q  18 aagaaggtcattatatgaacaacgaaagttgaaccctcacgatcttgtgagtgaaccaacactttacataggtacttgtatattaccccattctattgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856511 aagaaggtcattatatgaacaacgaaagttgaaccctcacgatcttgtgagtgaaccaacactttacataggtacttgtatattaccccattctattgtg 13856412  T
Q  118 attaacaagtgtgtaatttttaatattagtaatttattttagatgtaaatttgtttttcatctatataaaattacgaagtttggtttttcatccatacaa 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856411 at-aacaagtgtgtaatttttaatattagtaatttattttagatgtaaatttgtttttcatctatataaaattacgaagtttggtttttcatccatacaa 13856313  T
Q  218 aaaatcaacatttttgtttggtcctttgaaagttaaccaccaaatagttttagaattctgctctttacccaacacaaaacactcacacccaactgatttt 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856312 aaaatcaacatttttgtttggtcctttgaaagttaaccaacaaatagttttagaattctgctctttacccaacacaaaacactcacacccaactgatttt 13856213  T
Q  318 tcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  13856212 tcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcatcactggccgatgcaca 13856113  T
Q  418 agttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgttttttgacta 517  Q
    |||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13856112 agttaactcacgcaggttggccggtggtctgagctcaagaacacaggttttttggatggtggtcagcttttcaaccttgattttacacgttttttgacta 13856013  T
Q  518 tattaattgtagttataacctatg 541  Q
    ||||||||||||||||||||||||    
T  13856012 tattaattgtagttataacctatg 13855989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 201 - 541
Target Start/End: Complemental strand, 13868046 - 13867711
Alignment:
Q  201 gtttttcatccatacaaaaaatcaacatttttgtttggtcctttgaaagttaaccaccaaatagttttagaattctgctctttacccaacacaaaacact 300  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  13868046 gtttttcatccatacaaaaaatcaacatttttg----gtcctttgaaagttaaccagcaaatagttttagaattctgctctttatccaacataaaacact 13867951  T
Q  301 cacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgca 400  Q
    |||  |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  13867950 cacgtccaactgatttttcaaatatacccttgtgtgagtaaagtcacgctgcgtgacttaactcatgcacctaatagctcagcatgacttaagtcacgca 13867851  T
Q  401 ccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattt 500  Q
    ||||| |||| ||||| || ||||||| ||| |||||||| || | ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  13867850 ccactagccggtgcgcgagctaactcacgcaagttggccgatggtctgagc-caagaacacgcgttttttggatggtggtcagcttttcaaccttgattt 13867752  T
Q  501 tacacgttttttgactatattaattgtagttataacctatg 541  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  13867751 tacacgttttttgactatatttattgtagttataacctatg 13867711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 13868196 - 13868028
Alignment:
Q  18 aagaaggtcattatatgaacaacgaaagttgaaccctcacgatcttgtgagtgaaccaacactttacataggtacttgtatattaccccattctattgtg 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||| || ||||||| ||||||||    
T  13868196 aagaaggtcactatatgaacaacgaaagttgaaccctcacgatcttgcgagtgaacc--cactttacatatgtacttgtagatcaccccatactattgtg 13868099  T
Q  118 attaacaagtgtgtaatttttaatattagtaatttattttagatgtaaatttgtttttcatctatataaaa 188  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  13868098 attaacaagtgtgtaatttttaaaattagtaatttattttagatgtaaatatgtttttcatccatacaaaa 13868028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 305 - 512
Target Start/End: Complemental strand, 49261950 - 49261739
Alignment:
Q  305 cccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagc--tcagcgtgacttaagtcacgcacc 402  Q
    ||||||||||||| |||||| | ||||| |||||||||||||||| || ||||||||||||  ||||||||||   ||||||||||||||||||||||||    
T  49261950 cccaactgattttccaaatacatccatgcgtgagttaagtcacgcagcatgacttaactcacgcacctaatagagttcagcgtgacttaagtcacgcacc 49261851  T
Q  403 actggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctc--aagaacacacgttttttggatggtagtcagcttttcaaccttgattt 500  Q
    |||| |   ||||||||||||| || |||||||||||| || | |||||||  |||||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  49261850 actgacatgtgcgcaagttaacccacgcaggttggccgatggtctgagctctcaagaacacacgttttttggacggtggtcaggttttcaatcttgattt 49261751  T
Q  501 tacacgtttttt 512  Q
    ||||||||||||    
T  49261750 tacacgtttttt 49261739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 316 - 512
Target Start/End: Complemental strand, 31936475 - 31936280
Alignment:
Q  316 tttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcg 415  Q
    ||||||| |||||| || ||||||||||||||||  | ||||||||||||  ||||| || |||  | ||||||||||||||||||||||||||   |||    
T  31936475 tttcaaaaatacccctgcgtgagttaagtcacgcgacttgacttaactcacgcaccttattgctttgtgtgacttaagtcacgcaccactggcctgggcg 31936376  T
Q  416 caagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    | |||||||||| |||||||||||| || | ||||||||| ||||||||||||||| | | ||||||| ||||||||||| | | ||||||||||||    
T  31936375 cgagttaactcacgcaggttggccgatggtctgagctcaaaaacacacgttttttgaacgatagtcaggttttcaacctt-aatctacacgtttttt 31936280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 13842850 - 13842720
Alignment:
Q  18 aagaaggtcattatatgaacaacgaaagttgaaccctcacgatcttgtgagtgaaccaacactttacataggtacttgtatattaccccattctattgtg 117  Q
    ||||||||||| ||||| ||||||||| ||||||||  || |||||| | |||||||||||||||||| ||||| ||||| || |||| |||||||||||    
T  13842850 aagaaggtcatcatatggacaacgaaaattgaaccccaacaatcttgcgggtgaaccaacactttacagaggtatttgtagatcaccc-attctattgtg 13842752  T
Q  118 attaacaagtgtgtaatttttaatattagtaa 149  Q
    ||||||||||||||||||||||||||||||||    
T  13842751 attaacaagtgtgtaatttttaatattagtaa 13842720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 389 - 541
Target Start/End: Original strand, 372703 - 372854
Alignment:
Q  389 ttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagctttt 488  Q
    ||||||||||||||||||||   ||||  ||||||  || ||||||||||||||| | ||||||||||||||||||||||||||| |||  |||| ||||    
T  372703 ttaagtcacgcaccactggcatgtgcgtgagttaatccacgcaggttggccggtggtctgagctcaagaacacacgttttttggacggtgatcaggtttt 372802  T
Q  489 caaccttgattttacacgttttttgactatattaattgtagttataacctatg 541  Q
    ||||||||||| |||||||||||| |||  ||| |||||||||||||| ||||    
T  372803 caaccttgattctacacgtttttt-actgcatttattgtagttataacatatg 372854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 540
Target Start/End: Original strand, 2777926 - 2778135
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcag 432  Q
    |||||||||||||||| |||||||||||||||  ||||| ||| | || |||| ||||||||||| | |||||||||  ||||| |||||||||| |||     
T  2777926 gtgagttaagtcacgcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgcaa 2778025  T
Q  433 gttggccggtgatttgagctcaagaacacacgttttt-tggatggtagtcagcttttcaaccttgattttacacg-ttttttgactatattaattgtagt 530  Q
    ||||||||||| | ||  ||||| |||| |||||||| |||||||| || | |||||||||||| | | ||| || ||||||||| | ||| || |||||    
T  2778026 gttggccggtggtctgtcctcaataacaaacgtttttgtggatggtggtaaccttttcaaccttcaatctacgcgtttttttgaccacatttatggtagt 2778125  T
Q  531 tataacctat 540  Q
    ||||||||||    
T  2778126 tataacctat 2778135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 470
Target Start/End: Complemental strand, 49065683 - 49065549
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatag-ctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||| ||||||||||||||    ||||| |||  ||  |||||||||||||||||||||||||||| |||||| |||||||||| |||  ||    
T  49065683 agttaagtcacgttgcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacctt 49065584  T
Q  436 ggccggtgatttgagctcaagaacacacgtttttt 470  Q
    |||||||| |  ||||| ||||||| |||||||||    
T  49065583 ggccggtggtcagagctgaagaacaaacgtttttt 49065549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 42118906 - 42118999
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||  ||||| |  || || |||||||||||||||||||||||||    
T  42118906 tttttcaaatataaccctgcgtgagttaagtcacgctgcgtgacttaactcacacacctcacaagttctgcgtgacttaagtcacgcaccactg 42118999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 509
Target Start/End: Complemental strand, 14990453 - 14990266
Alignment:
Q  323 tatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagtta 422  Q
    |||| ||||| ||||||||||||||||  ||| | ||||||||  ||||| ||||||  ||||||||||||||| || ||  | |||| ||| | | |||    
T  14990453 tatagccatgcgtgagttaagtcacgcaacgttatttaactcacacaccttatagctttgcgtgacttaagtcatgctcctttagccggtgcacgaatta 14990354  T
Q  423 actcatgcaggttggccgg-tgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgttt 509  Q
    ||||| ||||||||||||| || || ||||| || |||||||||||||||||   | |||||||||| |||||| | | |||||||||    
T  14990353 actcacgcaggttggccggttggttagagctaaaaaacacacgttttttggactttggtcagctttttaaccttcaatctacacgttt 14990266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 37694696 - 37694574
Alignment:
Q  285 cccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagc 383  Q
    |||| |||||||||||| | |||| |   |||| ||||||||||| || |||||||||||||||| |||||||||||||||  ||||| |  ||||| ||    
T  37694696 cccagcacaaaacactcgcgcccaccatgttttccaaatatacccctgcgtgagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgc 37694597  T
Q  384 gtgacttaagtcacgcaccactg 406  Q
     ||||||||||||||||||||||    
T  37694596 atgacttaagtcacgcaccactg 37694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 337 - 471
Target Start/End: Complemental strand, 27761262 - 27761127
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatag-ctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||||||||||| |||| |    ||||| |||  ||| |||||||||||||||||||||||| ||| |||||| ||||||||||  || |||    
T  27761262 agttaagtcacgctgcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgtt 27761163  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttg 471  Q
    |||||||  |  || |||||||||| ||||||||||    
T  27761162 ggccggtagtcagaactcaagaacaaacgttttttg 27761127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 442
Target Start/End: Complemental strand, 9243054 - 9242945
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaatag-ctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcag 432  Q
    |||||||||||||| || ||||||||||||||  ||||| |||  ||| |||||||||||||||||||||||||  |  | ||| |||||||||| |||     
T  9243054 gtgagttaagtcacactacgtgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactgagccttccgcgagttaactcacgcaa 9242955  T
Q  433 gttggccggt 442  Q
    ||||||||||    
T  9242954 gttggccggt 9242945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 512
Target Start/End: Original strand, 42039021 - 42039145
Alignment:
Q  388 cttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttt 487  Q
    |||| |||||||||||||||||  ||||| |||||||||| ||| ||||||||||| |  || || ||||||| |||||||||||| |||  |||| |||    
T  42039021 cttatgtcacgcaccactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaacagacgttttttggacggtgttcaggttt 42039120  T
Q  488 tcaaccttgattttacacgtttttt 512  Q
    |||| ||| | |  |||||||||||    
T  42039121 tcaatcttcaatccacacgtttttt 42039145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 472
Target Start/End: Original strand, 32935692 - 32935775
Alignment:
Q  389 ttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    ||||||||||||||||| ||| |||||| |||||||||| ||| |||||||||||    ||||| ||||||| |||||||||||    
T  32935692 ttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaacaaacgttttttgg 32935775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 38131441 - 38131552
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcag 483  Q
    ||||||||||||||||||||| |||| |||| | |||||||||| ||| ||| ||||||| |   | || ||||||| |||||||||||| ||| |||||    
T  38131441 gtgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacgttagccggtggtcacaactgaagaacaaacgttttttggacggtggtcag 38131540  T
Q  484 cttttcaacctt 495  Q
     ||||| |||||    
T  38131541 gttttcgacctt 38131552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 372636 - 372697
Alignment:
Q  268 tagaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatataccc 329  Q
    ||||||| ||||||||||||||||||||||| ||   ||||||| |||||||||||||||||    
T  372636 tagaattttgctctttacccaacacaaaacattcgtgcccaactaatttttcaaatataccc 372697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 473
Target Start/End: Complemental strand, 24608238 - 24608149
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgga 473  Q
    |||| |||||||||||| ||||||    ||||| |||||||||| ||| ||||||||||| || |||||||| |||||||| ||||||||    
T  24608238 gtgagttaagtcacgcatcactggtatgtgcgcgagttaactcacgcaagttggccggtggttagagctcaaaaacacacgctttttgga 24608149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 40962842 - 40962765
Alignment:
Q  270 gaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcac 347  Q
    |||||||||||||  ||||||||||||||||| | ||||||||| |||  | |||||||| || ||||||||||||||    
T  40962842 gaattctgctcttctcccaacacaaaacactcgcgcccaactgaatttctagatatacccctgcgtgagttaagtcac 40962765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 512
Target Start/End: Complemental strand, 18414196 - 18414132
Alignment:
Q  448 gagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||||| |   ||||||||||||    
T  18414196 gagctcaagaacacatgttttttggacggtggtcagcttttcaaccttcaagctacacgtttttt 18414132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 473
Target Start/End: Complemental strand, 40962780 - 40962688
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccgg-tgatttgagctcaagaacacacgttttttgga 473  Q
    |||||| ||||||||| ||||||||||   ||| | |||||||||| ||||||||||||| || |  ||||||||||| ||||||||||||||    
T  40962780 gcgtgagttaagtcacacaccactggcatttgcacgagttaactcacgcaggttggccggttggtcagagctcaagaatacacgttttttgga 40962688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 8932527 - 8932589
Alignment:
Q  335 tgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcac 397  Q
    ||||||||||||| | | |||||||||||||  ||||| ||||||| ||||||||||||||||    
T  8932527 tgagttaagtcacacagtgtgacttaactcacgcaccttatagctctgcgtgacttaagtcac 8932589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Complemental strand, 21713251 - 21713161
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    ||||| |||||||||||||||| ||||| |||| | |||||||||| |||   ||||||||| |  ||||| ||||||| |||||||||||    
T  21713251 gcgtggcttaagtcacgcaccaatggcctatgcacgagttaactcacgcaacatggccggtggtcagagctgaagaacaaacgttttttgg 21713161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 13842688 - 13842631
Alignment:
Q  162 gtaaatttgtttttcatctatataaaattacgaagtttggtttttcatccatacaaaa 219  Q
    |||||| |||||||||||| |||||||| || | |||||||||||||||| |||||||    
T  13842688 gtaaatatgtttttcatctctataaaataacaatgtttggtttttcatccctacaaaa 13842631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 495
Target Start/End: Original strand, 31823045 - 31823122
Alignment:
Q  418 agttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    |||||||||| ||| ||||||||||| |  || || ||||||| |||||||||||| ||| ||||| |||||||||||    
T  31823045 agttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 31823122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 33985605 - 33985517
Alignment:
Q  313 atttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgca 400  Q
    ||||||||||||||||  |||||||||||||||||||  ||||  ||||||||  ||||| |  | ||| |||||||||||||||||||    
T  33985605 atttttcaaatatacctttgtgtgagttaagtcacgcaacgtggtttaactcacgcacctcacaaactctgcgtgacttaagtcacgca 33985517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 365
Target Start/End: Complemental strand, 2777958 - 2777927
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||||||||||||||||||||    
T  2777958 gtgagttaagtcacgctgcgtgacttaactca 2777927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 365
Target Start/End: Original strand, 37694615 - 37694646
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||||||||||||||||||||    
T  37694615 gtgagttaagtcacgctgcgtgacttaactca 37694646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 443
Target Start/End: Complemental strand, 34939513 - 34939383
Alignment:
Q  315 ttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccgat 412  Q
    |||||||||||  || || |||||||||||||||  |||||||||||| ||  ||||| |  ||||| || ||||||| |||||||| ||||| ||| ||    
T  34939513 ttttcaaatatgaccctgcgtgagttaagtcacgtagcgtgacttaacacacgcacctcacaagctctgcatgacttatgtcacgcaacactgagcctat 34939414  T
Q  413 gcgcaagttaactcatgcaggttggccggtg 443  Q
    |||| ||||||||   ||| |||||||||||    
T  34939413 gcgcgagttaacttccgcaagttggccggtg 34939383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 42118961 - 42118927
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||||||| |||||||||||||||    
T  42118961 tgtgtgagttaagtcacgcagcgtgacttaactca 42118927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 32303799 - 32303832
Alignment:
Q  268 tagaattctgctctttacccaacacaaaacactc 301  Q
    ||||||||||||||| ||||||||||||||||||    
T  32303799 tagaattctgctcttcacccaacacaaaacactc 32303832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 43502377 - 43502309
Alignment:
Q  376 agctcagcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaactcatgcaggttggccggtg 443  Q
    ||||| |||||||||||||| |||||||||| ||| |||||| ||||||||   ||| |||||||||||    
T  43502377 agctctgcgtgacttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtg 43502309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 52789396 - 52789440
Alignment:
Q  382 gcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaact 425  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  52789396 gcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 52789440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 270 - 512
Target Start/End: Original strand, 50561332 - 50561574
Alignment:
Q  270 gaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatcca 369  Q
    ||||||||||||||||||||||||||||| ||    |||||||||||| |||||||||||| | ||||||||||||||| || |||||||||||||   |    
T  50561332 gaattctgctctttacccaacacaaaacattcgtgtccaactgattttccaaatatacccaagcgtgagttaagtcacgttgtgtgacttaactcacgta 50561431  T
Q  370 cctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttt 469  Q
    |||||||||||||| |||||||||||| |||||||| |||  ||||| |||||||||| || |||||| ||||| | |||||||||||| |||| |||||    
T  50561432 cctaatagctcagcatgacttaagtcatgcaccacttgcctgtgcgcgagttaactcacgcgggttggtcggtggtctgagctcaagaatacacattttt 50561531  T
Q  470 tggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    |||| ||| ||||| ||||||||||||||| ||||| ||||||    
T  50561532 tggacggtggtcagtttttcaaccttgattctacacatttttt 50561574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 6755861 - 6755710
Alignment:
Q  323 tatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagtt 421  Q
    ||||| |||||| ||||||||||||||||||||||||||||||  ||||| ||| |||  | |||||||||||||| ||||||||||   ||||| ||||    
T  6755861 tatactcatgtgggagttaagtcacgctgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactggcatgtgcgcgagtt 6755762  T
Q  422 aactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgga 473  Q
    |||||| ||| ||||||||||| || ||||||||||||||||||||||||||    
T  6755761 aactcacgcaagttggccggtggttagagctcaagaacacacgttttttgga 6755710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 268 - 473
Target Start/End: Complemental strand, 25745339 - 25745133
Alignment:
Q  268 tagaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatc 367  Q
    |||||||||||||||  ||||||||||||||||| | || | ||||  |  || |||||||| || ||||||  |||||||| || ||||||||||||      
T  25745339 tagaattctgctcttctcccaacacaaaacactcgcgcctagctgaaataccatatatacccctgcgtgagtagagtcacgcagcatgacttaactcaca 25745240  T
Q  368 cacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccg-gtgatttgagctcaagaacacacgtt 466  Q
    ||||| ||||||| |||||||||||||||||| ||  |||||| ||| | |||||||||| ||||||||||||  || |  ||||||||||||||||| |    
T  25745239 caccttatagctctgcgtgacttaagtcacgctcctttggccgctgcacgagttaactcacgcaggttggccgattggtcagagctcaagaacacacggt 25745140  T
Q  467 ttttgga 473  Q
    |||||||    
T  25745139 ttttgga 25745133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 339 - 495
Target Start/End: Original strand, 39415302 - 39415459
Alignment:
Q  339 ttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttgg 437  Q
    |||||||||||||||||||||||||    ||||| ||| | || ||||||||||||||||||||||||||||  ||||  |||||||||| ||| |||||    
T  39415302 ttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttgg 39415401  T
Q  438 ccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    ||| || || || || ||||||| |||||||||||| ||| ||||| |||||||||||    
T  39415402 ccgatggttagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 39415459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 50561772 - 50561675
Alignment:
Q  269 agaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcat 366  Q
    |||||||||||||||| |||||||||||||||| | || |||||||||||||||||||    || |||||||||||||||||||||||||||||||||    
T  50561772 agaattctgctctttatccaacacaaaacactcgcgcctaactgatttttcaaatatatttctgcgtgagttaagtcacgctgcgtgacttaactcat 50561675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 25574829 - 25574940
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcag 483  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||||| |  || || ||||||| |||||||||||| ||| |||||    
T  25574829 gtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttggacggtggtcag 25574928  T
Q  484 cttttcaacctt 495  Q
     |||||||||||    
T  25574929 gttttcaacctt 25574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 48086797 - 48086956
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    ||||||||||| |||||||||||||||    ||||| ||| | || || ||||||||||||||||||||||||| |||||| |||||||||| ||| |||    
T  48086797 agttaagtcacactgcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgtt 48086896  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    |||||||| |  || || |  |||| |||||||||||| ||| ||||| |||||||||||    
T  48086897 ggccggtggtcagaactgactaacaaacgttttttggacggtggtcaggttttcaacctt 48086956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 473
Target Start/End: Original strand, 6462944 - 6463087
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatg 429  Q
    |||| ||||||||||||| ||||||||||||||||  ||||| ||| |||  | |||||||||||||||||||||||||   || |  |||||||||| |    
T  6462944 tgtgggagttaagtcacgttgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactcacg 6463043  T
Q  430 caggttggccggtgatttgagctcaagaacacacgttttttgga 473  Q
    || ||||||||||| ||  |||||||||||| | ||||||||||    
T  6463044 caagttggccggtggttaaagctcaagaacaaatgttttttgga 6463087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 541
Target Start/End: Original strand, 11161893 - 11161974
Alignment:
Q  460 acacgttttttggatggtagtcagcttttcaaccttgattttacacgttttttgactatattaattgtagttataacctatg 541  Q
    ||||||||||| || ||||||||| | ||||| ||||||||||||||||||||||||  ||| | |||||||||||||||||    
T  11161893 acacgttttttagacggtagtcagttattcaaacttgattttacacgttttttgactgcatttagtgtagttataacctatg 11161974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 331 - 512
Target Start/End: Complemental strand, 47560515 - 47560329
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaactcatccacctaat-agctcagcgtgacttaag----tcacgcaccactggccgatgcgcaagttaact 425  Q
    ||||||||||||||||||| |||||||||||||||  ||||| || || || ||||||||||||    ||||||||||||| |    || | | ||||||    
T  47560515 tgtgtgagttaagtcacgccgcgtgacttaactcacacaccttataagttctgcgtgacttaagtcactcacgcaccactgacttgggcacgatttaact 47560416  T
Q  426 catgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    || ||| |||||||||||   |||||||| ||||| |||| ||||||| |||  |||| ||||||||||| | | ||||||||||||    
T  47560415 cacgcacgttggccggtggcatgagctcacgaacaaacgtgttttggacggtgatcaggttttcaaccttcaatctacacgtttttt 47560329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 49742231 - 49742161
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||| |||||||||||||||  ||||| | | |||| |||||||||||||||||||||||||    
T  49742231 agttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 49501687 - 49501594
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg 406  Q
    |||| |||||||| || || |||||||||||||| | ||| |||||||||||  ||||| | | |||| |||||||||||||||||||||||||    
T  49501687 ttttccaaatataaccctgcgtgagttaagtcacacagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 32211124 - 32211235
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccgg-tgatttgagctcaagaacacacgttttttggatggtagt 480  Q
    ||||||||||||||| || ||| |||||| ||||| |||||||||||||| | ||||||| ||    |||||||| |||||| ||||||||||   | ||    
T  32211124 gcgtgacttaagtcatgctccagtggccggtgcgctagttaactcatgcatggtggccggttggccagagctcaaaaacacatgttttttggactttggt 32211223  T
Q  481 cagcttttcaac 492  Q
    ||||||||||||    
T  32211224 cagcttttcaac 32211235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 365
Target Start/End: Complemental strand, 36182854 - 36182823
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||||||||||||||||||||    
T  36182854 gtgagttaagtcacgctgcgtgacttaactca 36182823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 23029602 - 23029672
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaat-agctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||| |||||||||||||||  || || || ||||  ||||||||||||||| |||||||||    
T  23029602 agttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtgacttaagtcatgcaccactg 23029672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 25745078 - 25745036
Alignment:
Q  498 ttttacacgttttttgactatattaattgtagttataacctat 540  Q
    |||| ||||||||||||||||||| || |||||||||||||||    
T  25745078 tttttcacgttttttgactatatttatggtagttataacctat 25745036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 365
Target Start/End: Original strand, 47560477 - 47560511
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||||||| |||||||||||||||    
T  47560477 tgtgtgagttaagtcacgcggcgtgacttaactca 47560511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 23029631 - 23029602
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaact 363  Q
    ||||||||||||||||||||||||||||||    
T  23029631 gtgagttaagtcacgctgcgtgacttaact 23029602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 33448598 - 33448663
Alignment:
Q  338 gttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcacca 403  Q
    ||||||||| || |||| ||||||||||  ||| | |||||||  |||||||||||||||||||||    
T  33448598 gttaagtcaagcagcgtaacttaactcacacacgttatagctctacgtgacttaagtcacgcacca 33448663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 49742202 - 49742231
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaact 363  Q
    ||||||||||||||||||||||||||||||    
T  49742202 gtgagttaagtcacgctgcgtgacttaact 49742231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 55480427 - 55480394
Alignment:
Q  332 gtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||| ||||||||||||||||||||||    
T  55480427 gtgtgagttaattcacgctgcgtgacttaactca 55480394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 8628438 - 8628493
Alignment:
Q  389 ttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgat 445  Q
    |||||||||||||||||||  | || ||||||||||||| ||||| |||||||||||    
T  8628438 ttaagtcacgcaccactggttggtgggcaagttaactcacgcagg-tggccggtgat 8628493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 14995172 - 14995140
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaact 363  Q
    ||||| |||||||||||||||||||||||||||    
T  14995172 tgtgttagttaagtcacgctgcgtgacttaact 14995140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 267 - 512
Target Start/End: Complemental strand, 43835527 - 43835281
Alignment:
Q  267 ttagaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcat 366  Q
    |||||||| |||| |||||||||||||||||||||    |||||||| ||| |||||||| |  || |||||||||||||||| ||  |||||||||||     
T  43835527 ttagaattttgctatttacccaacacaaaacactcgtgtccaactgaatttccaaatatatct-tgcgtgagttaagtcacgcagcaggacttaactcac 43835429  T
Q  367 ccacctaatag--ctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacg 464  Q
     ||||||||||  ||||||||||||||||||||||||||| || |  ||||| |||||| ||||| ||||||| ||||    ||||||||||||||||||    
T  43835428 acacctaatagagctcagcgtgacttaagtcacgcaccaccggtctgtgcgcgagttaattcatgtaggttggtcggtagcctgagctcaagaacacacg 43835329  T
Q  465 ttttttggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    ||||||||| ||| || || ||||||||||||||| |||||| |||||    
T  43835328 ttttttggacggtggttaggttttcaaccttgattctacacgattttt 43835281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 34471724 - 34471566
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatag-ctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||||||||||||||||||    ||||| |||  ||  |||||||||||||||||||||| ||||  |||||| |||||||||| ||| |||    
T  34471724 agttaagtcacgctgcgtgacttaacttgcgcaccttataaactatgcgtgacttaagtcacgcaccattggct-atgcgcgagttaactcacgcacgtt 34471626  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    |||||||| || || || ||||||| |||||||||||| ||| ||||| |||||||||||    
T  34471625 ggccggtggttagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 34471566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 482
Target Start/End: Original strand, 3964010 - 3964109
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    |||||| |||||||||||| ||||| | | | ||| |||||||||| ||| ||||||||||| || ||||||||||||||| ||||||||||| ||||||    
T  3964010 gcgtgaattaagtcacgcatcactgtctg-tccgcgagttaactcacgcaagttggccggtggttagagctcaagaacacatgttttttggatagtagtc 3964108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 443
Target Start/End: Complemental strand, 23542872 - 23542768
Alignment:
Q  340 taagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggc 438  Q
    |||||||| ||||||||||||| | |  ||||  ||| |||| ||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||     
T  23542872 taagtcacactgcgtgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggt 23542773  T
Q  439 cggtg 443  Q
    |||||    
T  23542772 cggtg 23542768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 267 - 469
Target Start/End: Original strand, 1931273 - 1931478
Alignment:
Q  267 ttagaattctgctctttacccaacacaaaa-cactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    |||||||| |||||||  | |||||||||| ||||  ||||||||||| |||||| |||||| | |  | |||||||||||||||  |||||||||||||    
T  1931273 ttagaattttgctcttctcgcaacacaaaaacacttgcacccaactgaattttcatatatactcctacg-gagttaagtcacgctatgtgacttaactca 1931371  T
Q  366 tccacctaat--agctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggcc-ggtgatttgagctcaagaacaca 462  Q
      ||||||||  || |||| ||| |||||| ||||||||||||||  |  |||  ||||||||| |||||||| || | || | ||||||||| ||||||    
T  1931372 cgcacctaatagagttcagtgtggcttaaggcacgcaccactggcatagacgcgggttaactcacgcaggttgtccagctggtctgagctcaaaaacaca 1931471  T
Q  463 cgttttt 469  Q
    |||||||    
T  1931472 cgttttt 1931478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 1217723 - 1217814
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccac 404  Q
    |||| |||||||| || |||||||||||||||||| ||||||||||||||||  ||||| |  ||||  | |||||||||||||||||||||    
T  1217723 ttttccaaatataaccctgtgtgagttaagtcacgttgcgtgacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccac 1217814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 15743344 - 15743234
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    |||| ||||||||  | ||||||||||||||||||| ||  |||||||||||  ||||| | | |||| ||||||||||||||||||||||||| ||| |    
T  15743344 ttttccaaatataatcctgtgtgagttaagtcacgcagcaagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagccta 15743245  T
Q  412 tgcgcaagtta 422  Q
    ||||| |||||    
T  15743244 tgcgcgagtta 15743234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 35161539 - 35161651
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    ||||| ||||||| ||||| ||||||||||||| || ||| |||||||| || |||||| |  ||||| ||||||||| ||||||||||||||| ||| |    
T  35161539 ttttttaaatataaccatgcgtgagttaagtcatgcagcgagacttaacacacccacctcacaagctctgcgtgactt-agtcacgcaccactgagccta 35161637  T
Q  412 tgcgcaagttaact 425  Q
    ||||| ||||||||    
T  35161638 tgcgcgagttaact 35161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 4759363 - 4759270
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||| || || || |||||||||||||  ||||||||||| ||  ||||| |  ||||| ||||||||||||||| |||||||||    
T  4759363 tttttcaaatataaccctgcgtaagttaagtcacgcaacgtgacttaacacacgcacctcacaagctctgcgtgacttaagtcatgcaccactg 4759270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 5913251 - 5913140
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaactcatgca 431  Q
    |||||||||||||| | |||||||||||||||  ||||| |  ||||| |||||||||||||||| ||||| || |||  || || |||||||||  |||    
T  5913251 gtgagttaagtcacaccgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacacaccattgagcctctgtgcgagttaactcgcgca 5913152  T
Q  432 ggttggccggtg 443  Q
     |||||||||||    
T  5913151 agttggccggtg 5913140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 4322628 - 4322741
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    ||||| |||||||  | |||||||||||| |||||| ||| |||||||||||  ||||| |  || || |||| ||||| |||||||||||||| ||| |    
T  4322628 ttttttaaatataatcctgtgtgagttaactcacgcagcgagacttaactcacgcacctcacaagttctgcgtaacttaggtcacgcaccactgagccta 4322727  T
Q  412 tgcgcaagttaact 425  Q
    ||||| ||||||||    
T  4322728 tgcgcgagttaact 4322741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 472
Target Start/End: Complemental strand, 43693649 - 43693561
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    ||||||||| |||||||||| ||||  |||||| ||| |||||| |||   ||||||||| |  ||||| ||||||| |||||||||||    
T  43693649 gtgacttaattcacgcaccaatggcttatgcgcgagtaaactcacgcaccatggccggtggtcagagctgaagaacaaacgttttttgg 43693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 267 - 473
Target Start/End: Complemental strand, 5770764 - 5770557
Alignment:
Q  267 ttagaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcat 366  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||  |  || |||||| ||||  |||||||||||||||||||||||||||||||     
T  5770764 ttagaattctgctctttacccagcacaaaacactcgcacccagctgaaataccatatatacacatgcatgagttaagtcacgctgcgtgacttaactcac 5770665  T
Q  367 ccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgt 465  Q
     ||||| ||| |||  ||||| ||||||||||||||||||||||  ||||| || ||||||| ||| | ||||||||| || |||||||| |||||||||    
T  5770664 gcaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactcacgcaaggtggccggtggttagagctcaaaaacacacgt 5770565  T
Q  466 tttttgga 473  Q
    ||| ||||    
T  5770564 tttatgga 5770557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 267 - 473
Target Start/End: Complemental strand, 5767025 - 5766818
Alignment:
Q  267 ttagaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcat 366  Q
    ||||||||||||||||||||||  ||||||||||||| | |||||||  |  || ||||||||||| ||||||||||||||||||| || |||||||||     
T  5767025 ttagaattctgctctttacccagtacaaaacactcacgctcaactgaaataccatatatacccatgcgtgagttaagtcacgctgcatggcttaactcac 5766926  T
Q  367 ccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgt 465  Q
     ||||| ||| |||  ||||| ||||||||||||||||||||||  ||||| ||||||||||  || | || |||||| || ||||| || ||||||| |    
T  5766925 acaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactcacacaaggtgaccggtggttagagcttaaaaacacactt 5766826  T
Q  466 tttttgga 473  Q
    ||||||||    
T  5766825 tttttgga 5766818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 322 - 472
Target Start/End: Complemental strand, 23603105 - 23602952
Alignment:
Q  322 atatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccaccta--atagctcagcgtgacttaagtcacgcaccactggccgatgcgcaag 419  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| | || |||  ||| |||||||||||||||||||||||| ||| ||   ||||| ||    
T  23603105 atatacccatgcgtgagttaagtcacgttgcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcacaactagcttgtgcgcgag 23603006  T
Q  420 ttaactcatgcaggttggccggtga-tttgagctcaagaacacacgttttttgg 472  Q
    |||||||  ||||||||||| || | |  |||||||||||||||||||||||||    
T  23603005 ttaactcgcgcaggttggccagttagtcagagctcaagaacacacgttttttgg 23602952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 41871687 - 41871846
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||||||| ||||||||||    ||||| ||| | || | ||||||||||| |||||||||||||| |||||| |||||||||| ||| |||    
T  41871687 agttaagtcacgctgcatgacttaacttgcgcaccttataacctctgtgtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgtt 41871786  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    |||||||| |  || || ||||||| |||||||||||| ||| ||||| |||||||||||    
T  41871787 ggccggtggtaagaactgaagaacaaacgttttttggacggtggtcaggttttcaacctt 41871846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 49597190 - 49597306
Alignment:
Q  379 tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggta 478  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||||| |  || || ||||||| ||| |||||||| |||     
T  49597190 tcagcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaacgatttttggacggtg 49597289  T
Q  479 gtcagcttttcaacctt 495  Q
    ||||| |||||||||||    
T  49597290 gtcaggttttcaacctt 49597306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 540
Target Start/End: Original strand, 9343533 - 9343656
Alignment:
Q  418 agttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacg-ttttttgact 516  Q
    |||||||||| |||||||  ||||||||  |||||||||| ||||||||||||||| ||| ||||| ||||||||||| | |||||||| |||||| ||     
T  9343533 agttaactcacgcaggttaaccggtgatccgagctcaagagcacacgttttttggacggtggtcaggttttcaaccttcaatttacacgttttttttacc 9343632  T
Q  517 atattaattgtagttataacctat 540  Q
    | ||| || |||||||||||||||    
T  9343633 acatttatggtagttataacctat 9343656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 37708004 - 37708081
Alignment:
Q  283 tacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgactta 360  Q
    |||||| |||||||||||| | |||||||||||||| |||||||||  || |||||||||||||||||||||||||||    
T  37708004 tacccagcacaaaacactcgcgcccaactgattttttaaatatacctttgcgtgagttaagtcacgctgcgtgactta 37708081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 495
Target Start/End: Original strand, 48566758 - 48566871
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    |||||||||||||||||||  ||||||| |||||| |||||||||| ||| |||||| |||| |  || || ||||||| |||||||||||| ||| |||    
T  48566758 gcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttttttggacggtggtc 48566857  T
Q  482 agcttttcaacctt 495  Q
    || |||||||||||    
T  48566858 aggttttcaacctt 48566871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 470
Target Start/End: Original strand, 21482862 - 21482994
Alignment:
Q  339 ttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttgg 437  Q
    ||||||||||| ||||||||||||| |  ||||| ||| |||| |||||||||||||||||||||||| ||| |||| | |||||||||| ||| |||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttgg 21482961  T
Q  438 ccggtgatttgagctcaagaacacacgtttttt 470  Q
    ||| || |  ||||| ||||||| || ||||||    
T  21482962 ccgatggtcagagctgaagaacaaacttttttt 21482994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 3660269 - 3660175
Alignment:
Q  376 agctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgtttttt 470  Q
    ||||| |||||||||||||||||||||| ||||| |||||| |||||||||| |||  |||||||||| |  ||||| ||||||| |||||||||    
T  3660269 agctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttggccggtggtcagagctgaagaacaaacgtttttt 3660175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 470
Target Start/End: Complemental strand, 18844064 - 18843976
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgtttttt 470  Q
    |||||||||||||||| |||||||||    |||||||||||||||| ||| |||||||||||||  || || |||||||||||||||||    
T  18844064 gcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttggccggtgatcagaactgaagaacacacgtttttt 18843976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 12926759 - 12926872
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    |||| |||||||| || || |||||||||||||||| ||| |||||||||||| ||||| |  ||||| ||| ||||||||||| ||||||||| ||| |    
T  12926759 ttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgcacctcacaagctctgcgcgacttaagtcatgcaccactgagccta 12926858  T
Q  412 tgcgcaagttaact 425  Q
    ||||| ||||||||    
T  12926859 tgcgcgagttaact 12926872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 473
Target Start/End: Original strand, 47983638 - 47983773
Alignment:
Q  339 ttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttgg 437  Q
    ||||||||||| ||||||||||||| |  ||||| ||| | || |||||| |||||||||  |||||||||   ||||| |||||||| | ||| |||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatatgttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttgg 47983737  T
Q  438 ccggtgatttgagctcaagaacacacgttttttgga 473  Q
    |||||| |  || || ||||||||||||||||||||    
T  47983738 ccggtggtcagaactaaagaacacacgttttttgga 47983773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 3781856 - 3782009
Alignment:
Q  320 aaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaag 419  Q
    |||||||||| || ||||||||| |||||| |||||||||||||||  ||||| ||| |||  |||||||||||||| || |   |||||| ||| | ||    
T  3781856 aaatatacccctgcgtgagttaaatcacgcagcgtgacttaactcacacaccttataactc-tcgtgacttaagtcatgctcttttggccggtgcacgag 3781954  T
Q  420 ttaactcatgcaggttggccgg-tgatttgagctcaagaacacacgttttttgga 473  Q
    |||||||||| ||| ||| ||| || |  |||||| | |||||||||||||||||    
T  3781955 ttaactcatgtaggatggtcggttggtcagagctccataacacacgttttttgga 3782009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 492
Target Start/End: Original strand, 11012136 - 11012246
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    |||||| ||||||| | |||||||||||   |||  |||||||||| ||| ||||||||||| | |||||||| ||||| |||||||||||| ||| |||    
T  11012136 gcgtgagttaagtcgcacaccactggcctgggcgtgagttaactcacgcacgttggccggtggtatgagctcatgaacaaacgttttttggacggtggtc 11012235  T
Q  482 agcttttcaac 492  Q
    |  ||||||||    
T  11012236 aagttttcaac 11012246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 33686679 - 33686586
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaact 425  Q
    |||||||||||||||| ||| |||||||||||  ||||| | | |||  ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  33686679 gtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 33686586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 20447122 - 20447186
Alignment:
Q  338 gttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcacc 402  Q
    ||||||||||||||||||||||||||||  ||| | ||||||  ||||||||||||| |||||||    
T  20447122 gttaagtcacgctgcgtgacttaactcacacacgttatagctttgcgtgacttaagttacgcacc 20447186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 20532885 - 20532949
Alignment:
Q  338 gttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcacc 402  Q
    ||||||||||||||||||||||||||||  ||| | ||||||  ||||||||||||| |||||||    
T  20532885 gttaagtcacgctgcgtgacttaactcacacacgttatagctttgcgtgacttaagttacgcacc 20532949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 22605326 - 22605460
Alignment:
Q  270 gaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatcca 369  Q
    |||||||||||||  |||| |||||||||||| | ||||||   ||||  ||||||| || |  |||||||||||| ||| ||||||||||| |||  ||    
T  22605326 gaattctgctcttcccccagcacaaaacactcgcgcccaacatgttttctaaatataaccctacgtgagttaagtcgcgcagcgtgacttaagtcacgca 22605425  T
Q  370 cct-aatagctcagcgtgacttaagtcacgcacca 403  Q
    ||| |  |||||  |||||||||||||||||||||    
T  22605426 cctcacaagctctacgtgacttaagtcacgcacca 22605460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 361
Target Start/End: Complemental strand, 37313770 - 37313732
Alignment:
Q  323 tatacccatgtgtgagttaagtcacgctgcgtgacttaa 361  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37313770 tatacccatgtgtgagttaagccacgctgcgtgacttaa 37313732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 39222703 - 39222793
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    |||||||||||||||||||||| ||||| |||| | |||||||||| |||   ||| ||||| |  ||||| ||||||| |||||||||||    
T  39222703 gcgtgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcaccatggtcggtggtcagagctgaagaacaaacgttttttgg 39222793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 46923778 - 46923823
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactca 427  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||    
T  46923778 gcgtgacttaagtcacgcaccaatggcctatgcgcgagttaactca 46923823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 1671525 - 1671434
Alignment:
Q  270 gaattctgctctttacccaacacaaaacactcacacccaac-tgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaa 361  Q
    |||||||||||||  |||| || ||||||||| |  ||||| ||||||| ||||||||||  ||| ||||||||||||||| |||||||||||    
T  1671525 gaattctgctcttcccccatcataaaacactcgcgtccaacatgatttt-caaatatacctctgtatgagttaagtcacgcagcgtgacttaa 1671434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 42294655 - 42294620
Alignment:
Q  266 tttagaattctgctctttacccaacacaaaacactc 301  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42294655 tttagaattctgctcttcacccaacacaaaacactc 42294620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 3781905 - 3781871
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    |||||||||||||||||||||||||| ||||||||    
T  3781905 tgtgtgagttaagtcacgctgcgtgatttaactca 3781871  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 1671429 - 1671461
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcat 366  Q
    |||| ||||||||||||||||||||||||||||    
T  1671429 gtgaattaagtcacgctgcgtgacttaactcat 1671461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 5770665 - 5770697
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcat 366  Q
    |||||||||||||||| ||||||||||||||||    
T  5770665 gtgagttaagtcacgcagcgtgacttaactcat 5770697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 7014909 - 7014837
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccact 405  Q
    |||||||||||||| | ||| |||||||||||  ||||| | | ||||  |||||||||||||||||||||||    
T  7014909 gtgagttaagtcacacagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccact 7014837  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 32306549 - 32306477
Alignment:
Q  270 gaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaa 342  Q
    |||||||||||||  ||||||||||||||||| | |||||||||  |||| || ||| || || |||||||||    
T  32306549 gaattctgctcttctcccaacacaaaacactcgcgcccaactgaactttccaaaatatccctgcgtgagttaa 32306477  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 495
Target Start/End: Original strand, 46178670 - 46178754
Alignment:
Q  411 atgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    |||||| |||||||||| ||| |||| |||||| |  || || ||||||| |||||||||||  ||| ||||| |||||||||||    
T  46178670 atgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaacgttttttggccggtggtcaggttttcaacctt 46178754  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 337 - 512
Target Start/End: Original strand, 29908457 - 29908633
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||| ||||||||||||||||||    ||||| ||| | || |||||||||||||||||| ||||||||| |||||| |||||||||||||| |||    
T  29908457 agttaagttacgctgcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgtt 29908556  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    |||||||| || || || ||||||| |||||||||||| ||| ||||| |||||||| || | |  |||||||||||    
T  29908557 ggccggtggttagaactgaagaacaaacgttttttggacggtggtcaggttttcaactttcaatccacacgtttttt 29908633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 6903865 - 6903756
Alignment:
Q  319 caaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacc-taatagctcagcgtgacttaagtcacgcaccactggccgatgcgca 417  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||| |||| ||  | ||  ||||| ||||||||||||||||||||||| |||||     
T  6903865 caaatataccactgcgtgagttaagtcacgctgcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactggccggtgcgcg 6903766  T
Q  418 agttaactca 427  Q
    ||||||||||    
T  6903765 agttaactca 6903756  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 337 - 472
Target Start/End: Complemental strand, 29132767 - 29132631
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||||  |||||||||||| |  ||||| ||| | ||  |||||||||||||||||||||| |||| |||||| |||||||||| ||| |||    
T  29132767 agttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgtt 29132668  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    |||||||| |  ||||| ||||||| |||||||||||    
T  29132667 ggccggtggtcagagctgaagaacaaacgttttttgg 29132631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 4616793 - 4616700
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||  ||| | |  ||||| |||||||||||||||||| ||||||    
T  4616793 tttttcaaatataaccatgtgtgagttaagtcacgctgtgtgacttaactcacgcacttcacaagctctgcgtgacttaagtcacgccccactg 4616700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 384 - 512
Target Start/End: Original strand, 13785046 - 13785174
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcag 483  Q
    |||| ||||||||||||||| ||||| | | || |||||||||| ||| |||||||| || | |||||||| ||||| |||||||||||| ||| |||||    
T  13785046 gtgagttaagtcacgcaccattggcctaagtgcgagttaactcacgcacgttggccgatggtctgagctcatgaacaaacgttttttggacggtggtcag 13785145  T
Q  484 cttttcaaccttgattttacacgtttttt 512  Q
     |||||||| || | | ||||||||||||    
T  13785146 gttttcaactttcaatctacacgtttttt 13785174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 508
Target Start/End: Complemental strand, 24937454 - 24937357
Alignment:
Q  411 atgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtt 508  Q
    |||||| |||||||||| ||| |||||||||||||  || |||  ||||| |||||||||||| ||| ||||| ||||||||||| |||  |||||||    
T  24937454 atgcgcgagttaactcacgcacgttggccggtgatcagaactcttgaacaaacgttttttggacggtggtcaggttttcaaccttcattccacacgtt 24937357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 5814691 - 5814559
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgac-ttaagtcacgcaccactg-gccg 410  Q
    ||||||||||||| || || |||||||||||||||| ||| |||||||||||  ||||| |  ||||| ||||||| ||||||||||||| |||| |||     
T  5814691 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgactttaagtcacgcactactgagcct 5814592  T
Q  411 atgcgcaagttaactcatgcaggttggccggtg 443  Q
    || ||| ||||||||   ||| |||||||||||    
T  5814591 atacgcgagttaacttgcgcaagttggccggtg 5814559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 443
Target Start/End: Complemental strand, 5290831 - 5290724
Alignment:
Q  338 gttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||||| ||||||||||||||  ||||   | |||| ||||||||||||||||||||||||| ||| |||||  |||||||||  ||| |||    
T  5290831 gttaagtcacgctgtgtgacttaactcatgtacctctcaagctctgcgtgacttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagtt 5290732  T
Q  436 ggccggtg 443  Q
    || |||||    
T  5290731 ggacggtg 5290724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 41192538 - 41192407
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    |||| |||||||| || || |||||||||||||||| ||| |||||||||||  ||||| |  ||||| | |||||||||||||| |||||||| ||| |    
T  41192538 ttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgtgtgacttaagtcacacaccactgagccta 41192439  T
Q  412 tgcgcaagttaactcatgcaggttggccggtg 443  Q
    || || ||||||||   ||| |||||||||||    
T  41192438 tgtgcgagttaacttgcgcaagttggccggtg 41192407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 37057161 - 37057223
Alignment:
Q  344 tcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccact 405  Q
    ||||||||||||||||||||||  ||||| | | |||| ||||||||||||||||||||||||    
T  37057161 tcacgctgcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccact 37057223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 512
Target Start/End: Complemental strand, 25686110 - 25686009
Alignment:
Q  411 atgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtttt 510  Q
    |||||| |||||||||| ||| |||||| |||| |  || |||  ||||| |||||||||||| ||| ||||| ||||||||||| |||  |||||||||    
T  25686110 atgcgcgagttaactcacgcacgttggctggtggtcagaactcttgaacaaacgttttttggacggtggtcaggttttcaaccttcattccacacgtttt 25686011  T
Q  511 tt 512  Q
    ||    
T  25686010 tt 25686009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 12874244 - 12874288
Alignment:
Q  383 cgtgacttaagtcacgcaccactggccgatgcgcaagttaactca 427  Q
    |||||||||||||||||||||||| || |||||| ||||||||||    
T  12874244 cgtgacttaagtcacgcaccactgacctatgcgcgagttaactca 12874288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 443
Target Start/End: Original strand, 21083699 - 21083831
Alignment:
Q  313 atttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccg 410  Q
    |||||||||||||| || || |||||||||||||||| | | |||||||||||  || || |  ||||| ||||||||||||||||  || |||| |||     
T  21083699 atttttcaaatataaccctgcgtgagttaagtcacgcagtgagacttaactcacgcatctcacaagctctgcgtgacttaagtcacttacaactgagcct 21083798  T
Q  411 atgcgcaagttaactcatgcaggttggccggtg 443  Q
     ||||||||||||||   ||| |||||||||||    
T  21083799 ctgcgcaagttaacttgcgcaagttggccggtg 21083831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 540
Target Start/End: Original strand, 8556374 - 8556417
Alignment:
Q  497 attttacacgttttttgactatattaattgtagttataacctat 540  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||    
T  8556374 attttacacgttttttgactacattaatggtatttataacctat 8556417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 315 - 443
Target Start/End: Original strand, 8260812 - 8260942
Alignment:
Q  315 ttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaat-agctcagcgtgacttaagtcacgcaccactg-gccgat 412  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||| || | ||| ||||||||||||||||||||||||| |||  |    
T  8260812 ttttcaaatatacacctgcgtgagttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactgagccttt 8260911  T
Q  413 gcgcaagttaactcatgcaggttggccggtg 443  Q
    |||| |||||||||| ||| |||||||||||    
T  8260912 gcgcgagttaactcacgcaagttggccggtg 8260942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 324 - 442
Target Start/End: Original strand, 29714241 - 29714359
Alignment:
Q  324 atacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaa 423  Q
    ||||||||| || ||||||||||||||||||||||||| |||  ||||| ||||||| ||||||||||||||| ||||||||| |    |||| ||||||    
T  29714241 atacccatgcgttagttaagtcacgctgcgtgacttaaatcacgcaccttatagctctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaa 29714340  T
Q  424 ctcatgcaggttggccggt 442  Q
    |||| ||||||||||||||    
T  29714341 ctcacgcaggttggccggt 29714359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 382 - 495
Target Start/End: Complemental strand, 41219461 - 41219348
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||| ||| |||||| |||| |  || || ||||||| |||||||||| ||||| |||    
T  41219461 gcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttttttgtatggtggtc 41219362  T
Q  482 agcttttcaacctt 495  Q
    || |||||||||||    
T  41219361 aggttttcaacctt 41219348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 18239539 - 18239380
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    |||||||||||||||||||||||||||  | ||||| ||| | || | ||||||||||||||||| || ||||| |||||| |||||||| | ||| |||    
T  18239539 agttaagtcacgctgcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgtt 18239440  T
Q  436 ggccggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaacctt 495  Q
    || ||||| |  || || ||||||| |||||||||| | ||| ||||| |||||||||||    
T  18239439 ggtcggtggtcagaactgaagaacaaacgttttttgaacggtggtcaggttttcaacctt 18239380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 376 - 512
Target Start/End: Complemental strand, 35126328 - 35126192
Alignment:
Q  376 agctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatg 475  Q
    |||||||| || |||||||||||||| ||||| |  ||||| |||||||||| | || |||||| ||| | |||||||||||| |||| ||||||||| |    
T  35126328 agctcagcatggcttaagtcacgcacaactggtctgtgcgcgagttaactcacgtagattggccagtggtctgagctcaagaatacacattttttggacg 35126229  T
Q  476 gtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    || || || ||||||||||||||| ||  ||||||||    
T  35126228 gtggttaggttttcaaccttgattctatgcgtttttt 35126192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 443
Target Start/End: Complemental strand, 4035307 - 4035176
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    ||||||||||||| || || |||||||||||||||| ||| |||||||||||| ||||| |  | | | ||||||||||||||||||||||||| ||| |    
T  4035307 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgcacctcacaatccctgcgtgacttaagtcacgcaccactgagccta 4035208  T
Q  412 tgcgcaagttaactcatgcaggttggccggtg 443  Q
    ||||| ||||||||   ||| |||||||||||    
T  4035207 tgcgcgagttaacttgcgcaagttggccggtg 4035176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 39283927 - 39284014
Alignment:
Q  320 aaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaat-agctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||| ||||| |||||||||||||||| ||||| |||||||||  ||||| || ||||| |||||||||||||||||||||||||    
T  39283927 aaatataaccatgcgtgagttaagtcacgcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactg 39284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 443
Target Start/End: Complemental strand, 27874157 - 27874050
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    ||||||||||||||||||| |||||||    ||||  ||| | || |||||||||||| |||||||||||| || |||||| |||||||||| ||| |||    
T  27874157 agttaagtcacgctgcgtggcttaacttgcgcaccatataacctctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgtt 27874058  T
Q  436 ggccggtg 443  Q
    ||||||||    
T  27874057 ggccggtg 27874050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 395
Target Start/End: Complemental strand, 2914809 - 2914719
Alignment:
Q  305 cccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtc 395  Q
    |||||||| ||| |||| |||| || |||||||||||||||||||  | ||||||||||||  ||||| ||||||  ||||||||||||||    
T  2914809 cccaactgctttgtcaattatatccctgtgtgagttaagtcacgcaacatgacttaactcacgcaccttatagctttgcgtgacttaagtc 2914719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 33802907 - 33802957
Alignment:
Q  315 ttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||    
T  33802907 ttttcaaatatacccctgcgtgagttaagtcacgcagcgtgacttaactca 33802957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 39476529 - 39476619
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||| |||   ||||||||| |  ||||| ||||||| |||||||||||    
T  39476529 gcgtgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcaccatggccggtggtcagagctgaagaacaaacgttttttgg 39476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 34354480 - 34354412
Alignment:
Q  377 gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgat 445  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||||||||  || |||||| ||||||    
T  34354480 gctctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcacacacgttggctggtgat 34354412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 443
Target Start/End: Complemental strand, 37524249 - 37524182
Alignment:
Q  376 agctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtg 443  Q
    ||||| ||||||||||||||||||||||||||||  ||||| ||||| |||| ||| |||||| ||||    
T  37524249 agctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtg 37524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 21153755 - 21153845
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    |||||| ||||||||||||||||||||   ||||  |||||||||| ||| || |||||||| |  ||||| ||||||| |||||||||||    
T  21153755 gcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaacagacgttttttgg 21153845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 365
Target Start/End: Complemental strand, 33802958 - 33802927
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||||||||||||||||||||||||    
T  33802958 gtgagttaagtcacgctgcgtgacttaactca 33802927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 2912215 - 2912245
Alignment:
Q  335 tgagttaagtcacgctgcgtgacttaactca 365  Q
    |||||||||||||||||||||||||||||||    
T  2912215 tgagttaagtcacgctgcgtgacttaactca 2912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 40144874 - 40144845
Alignment:
Q  377 gctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||||||||||||||||||||    
T  40144874 gctcagcgtgacttaagtcacgcaccactg 40144845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 2912246 - 2912214
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcat 366  Q
    |||||||||||||||| ||||||||||||||||    
T  2912246 gtgagttaagtcacgcagcgtgacttaactcat 2912214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 541
Target Start/End: Original strand, 8725779 - 8725823
Alignment:
Q  498 ttttacacg-ttttttgactatattaattgtagttataacctatg 541  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||    
T  8725779 ttttacacgattttttgactacatttattgtagttataacctatg 8725823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 323 - 512
Target Start/End: Complemental strand, 11125930 - 11125740
Alignment:
Q  323 tatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagtta 422  Q
    ||||| |||| || |||||||||||||  ||||||||||||||  ||||| ||||||| ||||||||||||||| ||| |||||||   ||||| |||||    
T  11125930 tatactcatgcgttagttaagtcacgcaacgtgacttaactcacgcaccttatagctctgcgtgacttaagtcatgcatcactggcatgtgcgcgagtta 11125831  T
Q  423 actcatgcaggttggcc-ggtgatttgagctcaagaacacacgttttttggatggtagtcagcttttcaaccttgattttacacgtttttt 512  Q
    ||||| || |||||||| | || |  |||||||| ||||||| |||||||||   | ||||||||||||||||| | | ||||||||||||    
T  11125830 actcacgccggttggccagttggtcagagctcaaaaacacacattttttggactttggtcagcttttcaaccttcaatctacacgtttttt 11125740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 512
Target Start/End: Original strand, 19043885 - 19044016
Alignment:
Q  381 agcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagt 480  Q
    ||||||||||||||||| ||||| || |    |||| ||||||||||||||||||||| |||| | | |||||||||||||  |||||||| | ||| ||    
T  19043885 agcgtgacttaagtcacacaccattgacttgggcgcgagttaactcatgcaggttggctggtggtctaagctcaagaacacgtgttttttgaacggtggt 19043984  T
Q  481 cagcttttcaaccttgattttacacgtttttt 512  Q
    ||| ||||||||||||||| ||||||||||||    
T  19043985 cagtttttcaaccttgattctacacgtttttt 19044016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 349 - 472
Target Start/End: Complemental strand, 20202728 - 20202605
Alignment:
Q  349 ctgcgtgacttaactcatccacctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttg 448  Q
    |||||||||||||||||  || || ||||||| ||||||||| |||||| |||||||||||   |||| |||||||||  ||||||||||| ||| | ||    
T  20202728 ctgcgtgacttaactcacgcatcttatagctctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttggccagtggtctg 20202629  T
Q  449 agctcaagaacacacgttttttgg 472  Q
    ||||||||||||||| ||||||||    
T  20202628 agctcaagaacacacattttttgg 20202605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 6427284 - 6427374
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||| |||  ||||||||||||| ||||| ||||||| |||||||||||    
T  6427284 gcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcaccttggccggtgattagagctgaagaacaaacgttttttgg 6427374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 495
Target Start/End: Complemental strand, 41758798 - 41758685
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    ||||||||| |||||||||||| || || |||||| |||||||||||||| |||||| |||| |  || || ||||||| |||||||||||| ||| |||    
T  41758798 gcgtgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaactgaagaacaaacgttttttggacggtggtc 41758699  T
Q  482 agcttttcaacctt 495  Q
    || |||||||||||    
T  41758698 aggttttcaacctt 41758685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 474
Target Start/End: Original strand, 2599788 - 2599892
Alignment:
Q  370 cctaatagctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttt 469  Q
    ||||||| | || |||||||||||||||||||||||  ||| |||||  ||||||||| ||||||| | ||||| | ||| |||||||||||||||||||    
T  2599788 cctaataccacaacgtgacttaagtcacgcaccactaaccggtgcgcgtgttaactcacgcaggtttgtcggtggtctgaactcaagaacacacgttttt 2599887  T
Q  470 tggat 474  Q
    |||||    
T  2599888 tggat 2599892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 472
Target Start/End: Complemental strand, 1173087 - 1172932
Alignment:
Q  318 tcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagc-tcagcgtgacttaagtcacgcaccactggccgatgcgc 416  Q
    |||||||| ||| || || ||||||||||||| ||||||||||||     ||||| ||| | || ||||||||||||| |||||||||||||| ||||||    
T  1173087 tcaaatatgcccttgcgttagttaagtcacgcagcgtgacttaacaagcgcaccttataacctctgcgtgacttaagttacgcaccactggcctatgcgc 1172988  T
Q  417 aagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
     |||||||||| |||  |||| || || || ||||| ||||||| |||||||||||    
T  1172987 cagttaactcacgcaccttggtcgatggttagagctgaagaacaaacgttttttgg 1172932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 1082026 - 1081930
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaact 425  Q
    ||||||||||||||||||| ||| |||||||||||  ||||| | | |||| ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  1082026 tgtgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 1081930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 469
Target Start/End: Original strand, 16100832 - 16100968
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaatagctca-gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcag 432  Q
    ||||||||||||| ||  |||| |||||||||  ||||| |||  ||  |||||||||||||||||||||| | |||  ||||| |||||||||| |||     
T  16100832 gtgagttaagtcatgcgacgtggcttaactcacgcaccttataagtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaa 16100931  T
Q  433 gttggccggtgatttgagctcaagaacacacgttttt 469  Q
    ||||||||||||| ||  |||||||| ||||||||||    
T  16100932 gttggccggtgatctgtcctcaagaagacacgttttt 16100968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 443
Target Start/End: Complemental strand, 7084104 - 7083997
Alignment:
Q  337 agttaagtcacgctgcgtgacttaactcatccacctaatag-ctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggtt 435  Q
    ||||||||||||| |||||||||||||    ||||| |||  ||  |||||||||||||||||||| | ||||| |||||| ||||||||||||||  ||    
T  7084104 agttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcactaatggcctatgcgcgagttaactcatgcacctt 7084005  T
Q  436 ggccggtg 443  Q
    ||||||||    
T  7084004 ggccggtg 7083997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 512
Target Start/End: Original strand, 25898635 - 25898765
Alignment:
Q  382 gcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    |||||| ||||||||  ||||||||||| | |||  |||||||||| ||| |||||| |||| | |||| ||| ||||| ||| |||||||| ||| |||    
T  25898635 gcgtgatttaagtcatacaccactggcctaggcgtgagttaactcacgcacgttggctggtggtctgagttcatgaacaaacgatttttggacggtggtc 25898734  T
Q  482 agcttttcaaccttgattttacacgtttttt 512  Q
    || |||| |||||| | | ||||||||||||    
T  25898735 aggtttttaaccttcaatctacacgtttttt 25898765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 472
Target Start/End: Original strand, 10532795 - 10532883
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    |||| |||||||| |||||||||||   ||||| |||||||||| ||| ||||||||||| |  ||||| ||||||| |||||||||||    
T  10532795 gtgagttaagtcatgcaccactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacgttttttgg 10532883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 12143998 - 12144071
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg 406  Q
    |||||||||||||||| ||| |||||||||||  ||||| | | |||  |||||||||||||||||||||||||    
T  12143998 gtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 12144071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 40034157 - 40034064
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaatagct-cagcgtgacttaagtcacgcaccactg 406  Q
    ||||||||||||| || ||  |||||||||||||||  ||||||||||||||| ||||| | |  | | ||| |||||||||||||||||||||    
T  40034157 tttttcaaatataaccctgcatgagttaagtcacgcatcgtgacttaactcatgcaccttacaattactgcgagacttaagtcacgcaccactg 40034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 443
Target Start/End: Original strand, 2786684 - 2786795
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaactcatgca 431  Q
    |||||||||||| |||  || |||||||||||  ||||| | | |||| ||||||||||||||| ||||||||| ||| |||||| ||||||||   |||    
T  2786684 gtgagttaagtcgcgcaacgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgca 2786783  T
Q  432 ggttggccggtg 443  Q
     |||||||||||    
T  2786784 agttggccggtg 2786795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 24531078 - 24531032
Alignment:
Q  319 caaatatacccatgtgtgagttaagtcacgctgcgtgacttaactca 365  Q
    ||||||||||| || |||||||||||||||| | |||||||||||||    
T  24531078 caaatatacccctgcgtgagttaagtcacgcagtgtgacttaactca 24531032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 14410805 - 14410768
Alignment:
Q  329 catgtgtgagttaagtcacgctgcgtgacttaactcat 366  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  14410805 catgtgtgacttaagtcacgctgcgtgagttaactcat 14410768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 541
Target Start/End: Original strand, 23227292 - 23227373
Alignment:
Q  460 acacgttttttggatggtagtcagcttttcaaccttgattttacacgttttttgactatattaattgtagttataacctatg 541  Q
    |||| ||||||||| ||| ||||| | || ||  |||||||||||||||||||||||  ||| | |||||||| ||||||||    
T  23227292 acacattttttggacggtggtcagttatttaaatttgattttacacgttttttgactgcatttagtgtagttaaaacctatg 23227373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 541
Target Start/End: Complemental strand, 19749523 - 19749479
Alignment:
Q  498 ttttacacgtttttt-gactatattaattgtagttataacctatg 541  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  19749523 ttttacacgtttttttgactatattaagtgtagttaaaacctatg 19749479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 482
Target Start/End: Complemental strand, 23912385 - 23912236
Alignment:
Q  334 gtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcag 432  Q
    |||||| ||||||||| | |||||||||||||  ||||| ||| |||| ||||||||||||||| |||||||||||   ||||| |||||| ||| |||     
T  23912385 gtgagtgaagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgcaa 23912286  T
Q  433 gttggccggtgatttgagctcaagaacacacgttttttggatggtagtca 482  Q
    ||||||||||| || ||||||||||| |||||||||||||| ||| ||||    
T  23912285 gttggccggtggttagagctcaagaatacacgttttttggacggtggtca 23912236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 13312501 - 13312614
Alignment:
Q  297 cactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaat-agctcagcgtgacttaagtc 395  Q
    ||||| |||||| ||||||| || || || |||||| || ||||||||||||||||||||||||||| |  ||||| || ||||| ||||||||||||||    
T  13312501 cactcccacccagctgatttgtcgaaaatgcccatgcgttagttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgacttaagtc 13312600  T
Q  396 acgcaccactggcc 409  Q
    ||| ||||||||||    
T  13312601 acgaaccactggcc 13312614  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 319227 - 319338
Alignment:
Q  384 gtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttggatggtagtcag 483  Q
    ||||||||||||| |||||||||| | |||||| |||||||||| ||| |||||  |||| |  || || ||||||| |||||||||||||||| |||||    
T  319227 gtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaagaacaaacgttttttggatggtggtcag 319326  T
Q  484 cttttcaacctt 495  Q
     |||||||||||    
T  319327 gttttcaacctt 319338  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 1077518 - 1077659
Alignment:
Q  268 tagaattctgctctttacccaacacaaaacactcacacccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatc 367  Q
    ||||||||| ||||||| |||||| |||  |||| | ||||  |||  |||| || |||||| ||||||||||||||||||| |||| ||||||||||      
T  1077518 tagaattcttctctttatccaacaaaaataactcgcgcccagttgaactttccaaaatacccttgtgtgagttaagtcacgcagcgtaacttaactcacg 1077617  T
Q  368 cacctaatagctcagcgtgacttaagtcacgcaccactggcc 409  Q
    || || |||| || |||||| |||||| ||||||||||||||    
T  1077618 cagcttatagttctgcgtgatttaagttacgcaccactggcc 1077659  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 406
Target Start/End: Complemental strand, 30634271 - 30634177
Alignment:
Q  313 atttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacct-aatagctcagcgtgacttaagtcacgcaccactg 406  Q
    ||||| |||||||| || || |||||||||||||||| ||| |||||||||||  ||||| |  |||||  ||||||||||||||||||||||||    
T  30634271 attttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctacgtgacttaagtcacgcaccactg 30634177  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 11598951 - 11599082
Alignment:
Q  314 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaata-gctcagcgtgacttaagtcacgcaccactg-gccga 411  Q
    |||| |||||||| || || ||||||||| |||| | ||| |||||||||||  ||||| | | |||| ||||||||||||||| ||||||| | ||| |    
T  11598951 ttttccaaatataaccctgcgtgagttaactcacaccgcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcatgcaccaccgagccta 11599050  T
Q  412 tgcgcaagttaactcatgcaggttggccggtg 443  Q
    ||||| ||||||||   ||| |||||||||||    
T  11599051 tgcgcgagttaacttgcgcaagttggccggtg 11599082  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 9521407 - 9521439
Alignment:
Q  376 agctcagcgtgacttaagtcacgcaccactggc 408  Q
    ||||| |||||||||||||||||||||||||||    
T  9521407 agctctgcgtgacttaagtcacgcaccactggc 9521439  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 17399041 - 17399121
Alignment:
Q  389 ttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttt 469  Q
    ||||||||||||||||||||   || || |||||||||| ||| ||||||||||| | ||   |||||||||||| |||||    
T  17399041 ttaagtcacgcaccactggcatgtgtgcgagttaactcacgcaagttggccggtggtctgtcatcaagaacacacattttt 17399121  T

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Target: scaffold0223 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 16168 - 16038
Alignment:
Q  383 cgtgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggt-gatttgagctcaagaacacacgttttttggatggtagtc 481  Q
    ||||||||||||||||| ||| |||||  |||||  ||||||||| |||||||||||||| | |  |||||||| |||||||||||||||||   |||||    
T  16168 cgtgacttaagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttggccggttggtcagagctcaaaaacacacgttttttggactttagtc 16069  T
Q  482 agcttttcaaccttgattttacacgtttttt 512  Q
    |||||||||||||| | | ||||| ||||||    
T  16068 agcttttcaaccttcaatctacacatttttt 16038  T

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Target: scaffold0223; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 16215 - 16159
Alignment:
Q  305 cccaactgatttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaa 361  Q
    |||| |||||||  ||| ||||||| || ||||||||||||||||| ||||||||||    
T  16215 cccagctgatttgccaattatacccctgcgtgagttaagtcacgctacgtgacttaa 16159  T

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Target: scaffold0500 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 541
Target Start/End: Original strand, 1250 - 1331
Alignment:
Q  460 acacgttttttggatggtagtcagcttttcaaccttgattttacacgttttttgactatattaattgtagttataacctatg 541  Q
    ||||||||||||||  || ||||| | ||||| |||||||||||||||||||||||||  || | |||||||||||||||||    
T  1250 acacgttttttggactgtggtcagttattcaaacttgattttacacgttttttgactacgtttagtgtagttataacctatg 1331  T

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Target: scaffold0861 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 3808 - 3721
Alignment:
Q  385 tgacttaagtcacgcaccactggccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgttttttgg 472  Q
    ||||||||||||| ||||||||||| |||||| |||||||||| |||  |||||||||| |   |||| ||||||| |||||||||||    
T  3808 tgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcaaagctaaagaacaaacgttttttgg 3721  T

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Target: scaffold0217 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 470
Target Start/End: Original strand, 25544 - 25688
Alignment:
Q  328 ccatgtgtgagttaagtcacgctgcgtgacttaactcatccacctaat-agctcagcgtgacttaagtcacgcacca-ctggccgatgcgcaagttaact 425  Q
    ||||||||||||||||||||||||||||| |||| |||  ||||| || | ||  |||||||||||| |||| |||| |  |||  ||||| ||||||||    
T  25544 ccatgtgtgagttaagtcacgctgcgtgatttaattcacacaccttataatctatgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaact 25643  T
Q  426 catgcaggttggccggtgatttgagctcaagaacacacgtttttt 470  Q
    || ||| ||||||||||| |  || || ||||||| |||||||||    
T  25644 cacgcaagttggccggtggtcagaactgaagaacaaacgtttttt 25688  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 20094 - 20156
Alignment:
Q  382 gcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaactcatgcaggttggccggtg 443  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||   ||| |||||||||||    
T  20094 gcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtg 20156  T

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Target: scaffold0753 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 470
Target Start/End: Original strand, 3999 - 4088
Alignment:
Q  382 gcgtgacttaagtcacgcaccactg-gccgatgcgcaagttaactcatgcaggttggccggtgatttgagctcaagaacacacgtttttt 470  Q
    ||||||||||||||||||||||||| |||  | ||| |||||||||| ||| |||| |||||| |  || || ||||||| |||||||||    
T  3999 gcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgtttttt 4088  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 232439 - 232471
Alignment:
Q  331 tgtgtgagttaagtcacgctgcgtgacttaact 363  Q
    ||||| |||||||||||||||||||||||||||    
T  232439 tgtgttagttaagtcacgctgcgtgacttaact 232471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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