View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_high_5 (Length: 483)
Name: NF12770_high_5
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 31902365 - 31902803
Alignment:
| Q |
11 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgnnnnnnnnn |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31902365 |
cacaaagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgttttttttt |
31902464 |
T |
|
| Q |
111 |
naatagcaaaaaccactttattgttagttaaagtacatagtcataagttaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgctnn |
210 |
Q |
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| T |
31902465 |
ta-tagcaaaaaccactttattgttagttaaagtacatagtcataaattaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgctaa |
31902563 |
T |
|
| Q |
211 |
nnnnnn-ttactaaatgatatttcattcatttaatttgatagaatatgttaatacaaaacaaatttgctaagaacaaataaacaaacttaccgatatcca |
309 |
Q |
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| T |
31902564 |
aaaaaaattactaaatgatatttcattcatttaatttgatagaatatgttaatacaaaacaaatttgctaagaacaaataaacaaacttaccgatatcca |
31902663 |
T |
|
| Q |
310 |
ttttaatagcaaaataacacggtacaaaagcaatggtaatttaacttgttaagtatcaattaatctatcatatttgttcggggtccaaggacatttagat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31902664 |
ttttaatagcaaaataacacggtacaaaagcaatggtaatttaacttgttaagtatcaattaatctatcatatttgttcggggtccaaggacatttagat |
31902763 |
T |
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| Q |
410 |
ctgcaaatgatcatataaaagtttagatcaatactacctc |
449 |
Q |
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| T |
31902764 |
ctacaaatgatcatataaaagtttagatcaatactacctc |
31902803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 217 - 468
Target Start/End: Complemental strand, 31674364 - 31674116
Alignment:
| Q |
217 |
ttactaaatgatatttcattcatttaatttgatagaatatgtt---aatacaaaacaaatttgctaagaacaaataaacaaacttaccgatatccatttt |
313 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31674364 |
ttactaaatgatatttcattcattt-----gatagaatatgttgttaatacaatacaaatttgctaagaacaaataaacaaacttac-gatatccatttt |
31674271 |
T |
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| Q |
314 |
aatagcaaaataacacggtacaaaagcaatggtaatttaacttgttaagtatcaattaatctatcatatttgttcggggtccaaggacatttagatctgc |
413 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | |
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| T |
31674270 |
aatagcaaaataacaaggtacaaaagcaatggtaatttaacttgttaagtatcaattaatctatcatatttgttcagggtccaaggacaattagatctac |
31674171 |
T |
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| Q |
414 |
aaatgatcatataaaagtttagatcaatactacctcgtagcaatatgtgaattct |
468 |
Q |
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| T |
31674170 |
aaatgatcatataaaagtttagatcaatactacctcgtagcaatatgtgaattct |
31674116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 31680674 - 31680479
Alignment:
| Q |
11 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgnnnnnnnnn |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31680674 |
cacaaagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgttttttttt |
31680575 |
T |
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| Q |
111 |
naatagcaaaaaccactttattgttagttaaagtacatagtcataagttaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31680574 |
--atagcaaaaaccactttattgttagttaaagtacatagtcataaattaaattgtttcgattgtccttaggactactcatcaaaaaaactgatcgct |
31680479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 31918021 - 31918219
Alignment:
| Q |
11 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattg-nnnnnnnn |
109 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31918021 |
cacaaagcaaaagaaacgaccaataagaaaagaagcatggtaagacacttaaaaaaactttatatttttgagggaaaaaaccactttattgttttttttt |
31918120 |
T |
|
| Q |
110 |
nnaatagcaaaaaccactttattgttagttaaagtacatagtcataagttaaattgtttcgattgtccttagaactactcatcaaaaaaactgatcgct |
208 |
Q |
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| T |
31918121 |
ttaatagcaaaagccactttattgttagttaaagtacatagtcataaattaaattgtttcgattgtccttaggactactcgtcaaaataactgatcgct |
31918219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 52956951 - 52956856
Alignment:
| Q |
341 |
aatggtaatttaacttgttaagtatcaattaatctatcatatttgttcggggtccaaggacatttagatctgcaaatgatcatataaaagtttagat |
437 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
52956951 |
aatggtaatttaacttgttgagtatcaattaatgtatcatatttgttc-gggtctaaggacagttagatatacaaatgatcatataaaagtttagat |
52956856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 52957262 - 52957206
Alignment:
| Q |
11 |
cacagagcaaaagaaacgacaaataagaaaagaagcatggtaagacacttaaaaaaa |
67 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
52957262 |
cacaaagcaaaagaaacgacaaataagaaaagaagcatggtaaaatactaaaaaaaa |
52957206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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