View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_high_7 (Length: 400)
Name: NF12770_high_7
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 29449344 - 29448991
Alignment:
| Q |
18 |
cacatgaatatcatataagtaaactcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgt |
117 |
Q |
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| T |
29449344 |
cacatgaatatcatataagtaaactcaacaaattagctagtcac----atgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgt |
29449249 |
T |
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| Q |
118 |
catgtacctatttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtctacagcagaaaaggattaagagtccaccttatgata |
217 |
Q |
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| T |
29449248 |
catgtacctatttctgttgg-------------------gcacaaagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgata |
29449168 |
T |
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| Q |
218 |
ttacaacataaaacttaatttgtagaaaaaatattcaagacatgattnnnnnnnngggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagta |
317 |
Q |
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| T |
29449167 |
ttacaacataaaacttaatttgtagaaaaaatattcaagacatgattaaaaaaa-gggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagta |
29449069 |
T |
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| Q |
318 |
catatttgtgaagtgtagtttcttgtattagattttgtgtagtacctttgcttctttaaaatggaagttgagattaat |
395 |
Q |
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| T |
29449068 |
catatttgtgaagtgtagtttcttgtattagattttgtgtagtacctttgcttctttaaaatggaagttgagattaat |
29448991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
| Q |
182 |
tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat |
251 |
Q |
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| T |
29457149 |
tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat |
29457080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 29456979 - 29456942
Alignment:
| Q |
358 |
agtacctttgcttctttaaaatggaagttgagattaat |
395 |
Q |
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| T |
29456979 |
agtacctttgcttctttaaaatggaagttgagattaat |
29456942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
| Q |
277 |
gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt |
324 |
Q |
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| T |
29457031 |
gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt |
29456984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
| Q |
129 |
ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc |
181 |
Q |
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| T |
29461834 |
ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc |
29461783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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