View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12770_low_1 (Length: 653)
Name: NF12770_low_1
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 201 - 636
Target Start/End: Complemental strand, 35867387 - 35866935
Alignment:
| Q |
201 |
acaaaatatcaggtggggccaagacctctttacttaaattgcggcaaagaaacatttcaaagttcaaacactatcgataaatatcataataatcacagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35867387 |
acaaaatatcaggtggggccaagacctctttacttaaattgcggcaaagaaacatttcaaagttcaaacactatcgataaatatcataataatcacagat |
35867288 |
T |
|
| Q |
301 |
tgcatgatgtaacattaacggttaatctaaaattccacaataagagactacaatcacacaagtccatggttagttatacacgttcgatattcacaaacat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35867287 |
tgcatgatgtaacattaacggttaatctaaaattccacaataagagactacaatcacacaagtccatggttagttatacacgttcgatattcacaaacat |
35867188 |
T |
|
| Q |
401 |
tccattcacacagctattaatttataaacatcccacaaacaaattcaaattacacaaactaaattcctaggtcacacaacgaaaatcaagaatcttttct |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
35867187 |
tccattcacacagctattaatttataaccatcccacaaacaaattcaaattacacaaactaaattcctaggtcacacaacaaaaatcaaaaatcttttct |
35867088 |
T |
|
| Q |
501 |
ggttctaaagagcctatca-agaatc----------------ttgaacccgcacacatacatatcaaatgtcactacaactttttaccatatgtggcgca |
583 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35867087 |
ggttctaaagagcctatcagcgaaactcacacgtgctagagtttgaacccgcacacatgcatatcaaatgtcactacaactttttaccatatgtggcgta |
35866988 |
T |
|
| Q |
584 |
cttactgaataaaatcacgaatgtttacttgcagataatgtataacaacaacc |
636 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866987 |
cttacggaataaaatcacgaatgtttacttgcagataatgtataacaacaacc |
35866935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 35867599 - 35867415
Alignment:
| Q |
11 |
cacagataaccaaagacgagtcaaagaaaccccatcaatcctctatccagtgtaacgaaatatcctgaattgtatgcatcaacagaaacctacatgnnnn |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35867599 |
cacagataaccaaagaggagtcaaagaaaccacatcaatcctctatccagtgtaacgaaatatcctgaattgtatgtatcaacagaaacctacatgaaaa |
35867500 |
T |
|
| Q |
111 |
nnnnnnnnnnnntgactatcaacaaaaacccattaagcgaagcataccaaacaagtcaactatattgtccatggtttttactcaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35867499 |
aagacaaaaaaatgactatcaacaaaaacccattaagcgaagcataccaaacaagtcaactat-ttgtccatggtttttactcaaa |
35867415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University