View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_low_11 (Length: 280)
Name: NF12770_low_11
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 41544063 - 41544309
Alignment:
| Q |
14 |
agaggaagatcaaaagctagcacaatgcatccaaattcatggtgccaagaaatggaaaactgttgcaaacaattcaggtgataagacaaaagttattctt |
113 |
Q |
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| T |
41544063 |
agaggaagatcaaaagctagcacaatgcatccaaattcatggtgccaagaaatggaaaactgttgcaaacaattcaggtgataagacaaaagttattctt |
41544162 |
T |
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| Q |
114 |
ttaatttattactactcacaagtcacaagtgaaaaatttacaagtttagaaaagaaaggggaaaaaagttgttacttgaaaccaaagtaagtgctgcaat |
213 |
Q |
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| T |
41544163 |
tta-----ttactactcaaaagtcacaagtgaaaaatttacaagtttagaaaagaaaggggaaaaaagttgttacttgaaaccaaagtaagtgctgcaat |
41544257 |
T |
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| Q |
214 |
tttgtttgcaggtttgaataggtgtggaaagagttgcaggctaagatggttg |
265 |
Q |
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| T |
41544258 |
tttgtttgcaggtttgaataggtgtggaaagagttgcaggctaagatggttg |
41544309 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 2792089 - 2792051
Alignment:
| Q |
222 |
caggtttgaataggtgtggaaagagttgcaggctaagat |
260 |
Q |
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| T |
2792089 |
cagggttgaataggtgtggtaagagttgcaggctaagat |
2792051 |
T |
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