View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_low_3 (Length: 548)
Name: NF12770_low_3
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 24 - 533
Target Start/End: Complemental strand, 16735339 - 16734830
Alignment:
| Q |
24 |
atagaagacatgcattctgaattcccattatcttgcaagaacttagcaagtccaaaatcagcaacatgagcctcaaattcagagttcaacaatatattat |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16735339 |
atagaagacatgcattctgaattcccattatcttgcaagaacttagcaagtccaaaatcagcaacatgagcctcaaattcagagttcaacaatatattat |
16735240 |
T |
|
| Q |
124 |
ttgacttaacatctctatgaatgatcaaaggtgaacaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaattttcaacctaacattcca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16735239 |
ttgacttaacatctctatgaatgatcaaaggtgaacaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaattttcaacctaacattcca |
16735140 |
T |
|
| Q |
224 |
tttcaaaaactcacctctttttccatgcaaaacttcaccaaggctaccattttccatgtaatcataaacaagcaaatttgtttctttgtttgtacaaaat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16735139 |
tttcaaaaactcacctctttttccatgcaaaacttcaccaaggctaccattttccatgtaatcataaacaagcaaatttgtttctttgtttgtacaaaat |
16735040 |
T |
|
| Q |
324 |
gcaaccaacctaacaatatacctgtgtctgattctacctaatgtcttaatttctgctaaaaagccgttatcggcatgagaagaagaatttcctttgttga |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16735039 |
gcaaccaacctaacaatatacctgtgtctgattctacctaatgtcttaatttctgctgaaaagccgttatcggcatgagaagaagaatttcctttgttga |
16734940 |
T |
|
| Q |
424 |
ttcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctcttcctatcacattgctttcctttat |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16734939 |
ttcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctcttcctatcacattgctttcctttat |
16734840 |
T |
|
| Q |
524 |
gcaacctatg |
533 |
Q |
| |
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|||||||||| |
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| T |
16734839 |
gcaacctatg |
16734830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 58 - 522
Target Start/End: Original strand, 39225920 - 39226375
Alignment:
| Q |
58 |
gcaagaacttagcaagtccaaaatcagcaacatgagcctcaaattcagagttcaacaatatattatttgacttaacatctctatgaatgatcaaaggtga |
157 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |
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| T |
39225920 |
gcaagaacttagcaagtccaaaatcagcaacatgagcctcaaactcagagttcaacaatatgttatttgacttaacatctctatgaacaatcaaaggaca |
39226019 |
T |
|
| Q |
158 |
acaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaattttcaacctaacattccatttcaaaaactcacctctttttccatgcaaaact |
257 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||| || ||||||| |||||||| ||| | | |||| | |||||||| |||||||| ||| |
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| T |
39226020 |
acaatcatggtgcaaatagcaaagtcctttagcagcttcagttgctattttcaccctaacatcccactcaagaaacccccctcttttcccatgcaacact |
39226119 |
T |
|
| Q |
258 |
tcaccaaggctaccattttccatgtaatcataaacaagcaaatttgtttctttgtttgtacaaaatgcaaccaacctaacaatatacctgtgtctgattc |
357 |
Q |
| |
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||||| | ||||||||| |||||| ||||||||||||||||| || ||| | |||| ||||||||| | |||| | ||||| || ||||| || |||| |
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| T |
39226120 |
tcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgctaacaacttcacaatgtatctgtgccttattc |
39226219 |
T |
|
| Q |
358 |
tacctaatgtcttaatttctgctaaaaagccgttatcggcatgagaagaagaatttcctttgttgattcctaacaatttcttcacagcaatttcatctcc |
457 |
Q |
| |
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|||| | ||| || ||||| ||| | || || |||| ||| |||| || |||||||| |||||||| || || |||||||| | || ||||| |
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| T |
39226220 |
taccaagtgtttttatttcagctgataaaccattat---cataagaacaa------cctttgttaattcctaataactttttcacagctactttttctcc |
39226310 |
T |
|
| Q |
458 |
atttggcattgttcctttgtacacaacacctgctccacctcttcctatcacattgctttccttta |
522 |
Q |
| |
|
|||||||||||||||| || |||||||| || || ||||||||||| | || |||||||||| |
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|
| T |
39226311 |
atttggcattgttcctccatatacaacaccagcacctcctcttcctatgatgttactttccttta |
39226375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 4979380 - 4979313
Alignment:
| Q |
24 |
atagaagacatgcattctgaattcccattatcttgcaagaacttagcaagtccaaaatcagcaacatg |
91 |
Q |
| |
|
|||| |||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
4979380 |
atagcagacatgcattcagatgttccagaatcttgcaagaacttggcaagtccaaaatcagcaacatg |
4979313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 59 - 208
Target Start/End: Complemental strand, 26736062 - 26735913
Alignment:
| Q |
59 |
caagaacttagcaagtccaaaatcagcaacatgagcctcaaattcagagttcaacaatatattatttgacttaacatctctatgaatgatcaaaggtgaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||| ||||||||||| ||||||||||| | ||||||| |
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| T |
26736062 |
caagaacttagcaagtccaaaatcagcaacatgagcctcaaaatcagcatcaagcaatatattattagacttaacatccctatgaatgataagaggtgaa |
26735963 |
T |
|
| Q |
159 |
caatcatgatgcaaataacaaagtcctttagcagcttcaacagcaatttt |
208 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
26735962 |
caatcatggtgcaaatagcaaagtcccttagcagcttccacagcaatttt |
26735913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 40403931 - 40404115
Alignment:
| Q |
24 |
atagaagacatgcattctgaattcccattatcttgcaagaacttagcaagtccaaaatcagcaacatgagcctcaaattcagagttcaacaatatattat |
123 |
Q |
| |
|
|||| |||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||| || ||||| | || | | ||| ||||| | |
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| T |
40403931 |
atagcagacatgcattcagaagttccagaatcttgcaagaacttagcaagtccaaaatcagcaacatgggcttcaaagcctgaatcaagcaagatattgt |
40404030 |
T |
|
| Q |
124 |
ttgacttaacatctctatgaatgatcaaaggtgaacaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaatttt |
208 |
Q |
| |
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|||| || ||||| | ||||| || | ||||||||| |||||||| | ||||||||| || || |||||||| ||||||||||| |
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| T |
40404031 |
ttgatttcacatcacgatgaacaattagaggtgaacagtcatgatgtagataacaaagaccctttgcagcttccacagcaatttt |
40404115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 38868310 - 38868260
Alignment:
| Q |
158 |
acaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaatttt |
208 |
Q |
| |
|
||||||||| ||||||||| ||||||| | |||||| |||||||||||||| |
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|
| T |
38868310 |
acaatcatggtgcaaataagaaagtccctcagcagcatcaacagcaatttt |
38868260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 38872219 - 38872169
Alignment:
| Q |
158 |
acaatcatgatgcaaataacaaagtcctttagcagcttcaacagcaatttt |
208 |
Q |
| |
|
||||||||||||||||||| ||||||| | | |||| |||||||||||||| |
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|
| T |
38872219 |
acaatcatgatgcaaataagaaagtccctcaacagcatcaacagcaatttt |
38872169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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