View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_low_4 (Length: 535)
Name: NF12770_low_4
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 43408147 - 43407634
Alignment:
| Q |
8 |
aagcaaaggacagaacattttttgagtgctataaaaaccctgccacaccctcacttcaaaatcatgtattttaattccaactacaacaactagttacaca |
107 |
Q |
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| T |
43408147 |
aagcataggacagaacattttttgagtgctataaaaaccctgccacaccctcacttcaaaatcatgtattttaattccaactacaacaactagttacaca |
43408048 |
T |
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| Q |
108 |
acattgttcattcccttattttattctttctgtgtccattcagcttcttctaatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408047 |
acattgttcattcccttattttattctttctgtgtccattcagcttcttctaatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaat |
43407948 |
T |
|
| Q |
208 |
gaaacagtccctctttgatcaggtaggttccttaattgtcactttgctctcatttttctt-----cttcttttcattgccaatcattagaaataccacat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43407947 |
gaaacagtccctctttgatcaggtaggttccttaattgtcactt-gctctcatttttcttttcttcttcttttcattgccaatcattagaaataccacat |
43407849 |
T |
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| Q |
303 |
caactcataatcactaattcaaatatgcactttcctaagttaccaaataataatatcatacgtgaatgtgtcttcattgaagggtacataactaatcaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
43407848 |
caactcataatcactaattcaaatatgcactttcctaagttaccaaataataatatcatacgtgaatgtgtcttcattgatggctatctaactaatcaaa |
43407749 |
T |
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| Q |
403 |
tacttttggccatatgcagggacatcttgatgaacagtttattcaacttgaagaattgcaagatgatgctaatcctaattttgttgaggaaattgtcact |
502 |
Q |
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| T |
43407748 |
tacttttggccatatgcagggacatcttgatgaacagtttattcaacttgaagaattgcaagatgatgctaatcctaattttgttgaggaaattgtcact |
43407649 |
T |
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| Q |
503 |
ctttactaccgtgat |
517 |
Q |
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| T |
43407648 |
ctttactaccgtgat |
43407634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 373 - 517
Target Start/End: Complemental strand, 43395560 - 43395416
Alignment:
| Q |
373 |
tcttcattgaagggtacataactaatcaaatacttttggccatatgcagggacatcttgatgaacagtttattcaacttgaagaattgcaagatgatgct |
472 |
Q |
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|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395560 |
tcttcattgatggctatctaactaatcaaatacttttggccatatgcagggacatcttgatgaacagtttattcaacttgaagaattgcaagatgatgct |
43395461 |
T |
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| Q |
473 |
aatcctaattttgttgaggaaattgtcactctttactaccgtgat |
517 |
Q |
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| T |
43395460 |
aatcctaattttgttgaggaaattgtcactctttactaccgtgat |
43395416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 43395799 - 43395678
Alignment:
| Q |
131 |
ttctttctgtgtccattcagcttcttct---aatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctctttgatc |
227 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43395799 |
ttctttctgtgtcccttcagcttcttcttctaatcatcaatcatggacagaaacaattctcgcagacaacttgctgcaatgaaacagtccctctttgatc |
43395700 |
T |
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| Q |
228 |
aggtaggttccttaattgtcac |
249 |
Q |
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| T |
43395699 |
aagtaggttccttaattttcac |
43395678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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