View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_low_6 (Length: 409)
Name: NF12770_low_6
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 233 - 402
Target Start/End: Complemental strand, 44001682 - 44001516
Alignment:
| Q |
233 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatcatcaagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
332 |
Q |
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| T |
44001682 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatca---agatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
44001586 |
T |
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| Q |
333 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatg |
402 |
Q |
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| T |
44001585 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatg |
44001516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 44001897 - 44001730
Alignment:
| Q |
15 |
aaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagtttcgattcgatctggtggt |
114 |
Q |
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| T |
44001897 |
aaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagattcgattcgatctggtggt |
44001798 |
T |
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| Q |
115 |
ttgggcggtctaaataactcttaattaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
186 |
Q |
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| T |
44001797 |
ttgggcggtctaaataactc----ttaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
44001730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 389
Target Start/End: Original strand, 39865935 - 39866038
Alignment:
| Q |
286 |
atggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaac |
385 |
Q |
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| T |
39865935 |
atggagaaggtgatgaggttggctacagaaaagggtgtggtggtattcaccaagagctcttgttgtctatgctatgcagtgaacattttgtttcaagaaa |
39866034 |
T |
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| Q |
386 |
ttgg |
389 |
Q |
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|||| |
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| T |
39866035 |
ttgg |
39866038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 389
Target Start/End: Original strand, 39861478 - 39861584
Alignment:
| Q |
283 |
aagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaag |
382 |
Q |
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|||||||| || |||||||||||||| | ||||| ||||| ||||||||||| ||||| || |||||| | ||||||||||| |||||| ||||||||| |
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| T |
39861478 |
aagatggagaaggtgatgaggttggctacagaaaagggtgttgtgattttcaccaagagctcttgttgtttgtgctatgcagtgaacattttgtttcaag |
39861577 |
T |
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| Q |
383 |
aacttgg |
389 |
Q |
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|| |||| |
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| T |
39861578 |
aaattgg |
39861584 |
T |
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