View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12770_low_8 (Length: 372)
Name: NF12770_low_8
Description: NF12770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12770_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 33713871 - 33714220
Alignment:
| Q |
19 |
acgtttacatggagcaagaagagaagtacactgaagctgtaatgtctgattcagaacgcattgttaataagcttcattttgaaatggcgtcgagaatacc |
118 |
Q |
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| T |
33713871 |
acgtttacatggagcaagaagagaagtacactgaagctgtaatgtctgattcagaacgcattgttaataagcttcattttgaaatggcctcgagaatacc |
33713970 |
T |
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| Q |
119 |
gaatgaactttctacttttcctcttcgttggggaccttggtttgttct------tcttcttcttatttagaattgttatttgaatattgataacaaaatt |
212 |
Q |
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| T |
33713971 |
gaatgaactttctacttttcctcttcgttggggaccttggtttgttcttcttcttcttcttcttatttagaattgttatttgtatattgataacaaagtt |
33714070 |
T |
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| Q |
213 |
ttataactttttaagtggataatgcagtaatatgaacttatcagaatattttgtgacatgccacacttctgattacattcgataatgtcgtcttctcaaa |
312 |
Q |
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| T |
33714071 |
tgataactttttaagtggataatgcagtaatatgaacttatcagaatagtttgtgacatgccacacttctgattacattcgataatgtcatcttctcaaa |
33714170 |
T |
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| Q |
313 |
ttactactggtgtagacttgtatgtgaggtgttcgatgtttgtgtctgtg |
362 |
Q |
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| T |
33714171 |
ttactactggtgtagacttgtatgtgaggtgttcgatgtttgtgtttgtg |
33714220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 7512251 - 7512206
Alignment:
| Q |
274 |
cacacttctgattacattcgataatgtcgtcttctcaaattactac |
319 |
Q |
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| T |
7512251 |
cacacatctgattacattcaataatgtcattttctcaaattactac |
7512206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 7512489 - 7512449
Alignment:
| Q |
280 |
tctgattacattcgataatgtcgtcttctcaaattactact |
320 |
Q |
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| T |
7512489 |
tctgattacattcaataatgtcattttctcaaattactact |
7512449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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