View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_high_1 (Length: 509)
Name: NF12772_high_1
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 10336860 - 10336542
Alignment:
| Q |
18 |
gttgtgtccctccctgccataatgaagcttatcaccatgtccctaattacttcttcctcatgccctacaagaaaaatatttcacatataaaatcataatt |
117 |
Q |
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| T |
10336860 |
gttgtgtccctccctgccataatgaagcttatcaccatgtccctaattacttcttcctcatgccctacaagaaaaatatttcacatataaaatcataatt |
10336761 |
T |
|
| Q |
118 |
cattttatttaatagataannnnnnnnnaatgatatttaatcccattaaaaagatagagnnnnnnn---gctactaaacaaagaactattggaaaatgtt |
214 |
Q |
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| T |
10336760 |
cattttatttaatagataatttttttt-aatgatatttaatcccattaaaaagatagagaaaaaaaaaagctactaaacaaagaactattggaaaatgtt |
10336662 |
T |
|
| Q |
215 |
caccaaccggccgtcagcttagcttaggaaggtttgcacaatatatactgccggagttcaaaccgcgacacttattcactttaaaaatatgaatttctaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10336661 |
caccaaccggccgtcagcttagcttaggaaggtttgcataatatatattgccagagttcaaaccgcgacacttattcactataaaaatatgaatttctaa |
10336562 |
T |
|
| Q |
315 |
ccaataaactatttgatagg |
334 |
Q |
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|||||||||||||||||||| |
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| T |
10336561 |
ccaataaactatttgatagg |
10336542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 344 - 494
Target Start/End: Complemental strand, 10336110 - 10335960
Alignment:
| Q |
344 |
ttaatgttcaccaacctgaagaaataagacgtgacaagagatcttgaccaccaacaagctcctctccttttacattcatcttcttcttcctttctaaaat |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10336110 |
ttaatgttcaccaacctgaagaaataagacgtgacaagagatcttgaccaccaacaagctcctctccttttacattcatcatcttcttcctttctaaaat |
10336011 |
T |
|
| Q |
444 |
catttccatgacaagtatcttaacctccttaactgcatctctaagcctcct |
494 |
Q |
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| T |
10336010 |
catttccatgacaagtatcttaacctccttaactgcatctctaagcctcct |
10335960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 19208900 - 19208853
Alignment:
| Q |
283 |
cacttattcactttaaaaatatgaatttctaaccaataaactatttga |
330 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
19208900 |
cacttattcactttaaaaatgtgaatttctaaccactaaaccatttga |
19208853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 37318561 - 37318519
Alignment:
| Q |
283 |
cacttattcactttaaaaatatgaatttctaaccaataaacta |
325 |
Q |
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||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
37318561 |
cacttattcactttaaaaaaatgaatttttaaccaacaaacta |
37318519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 2710584 - 2710548
Alignment:
| Q |
286 |
ttattcactttaaaaatatgaatttctaaccaataaa |
322 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||| |
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| T |
2710584 |
ttattcactttaaaaaaatgaatttctaaccactaaa |
2710548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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