View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12772_high_20 (Length: 239)
Name: NF12772_high_20
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26855945 - 26855723
Alignment:
| Q |
1 |
ccatggattttcttaaacatagtgccaacacaaatactaatattgttggaactgctatgctagccaatcccagtgatacgtgcatctttccggatttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
26855945 |
ccatggattttcttaaacatagtgccaatacaaatactaatgttaatggaactgttatgctagccaatcccactgatacatgcatctttccggatttttt |
26855846 |
T |
|
| Q |
101 |
caataggcttggatccattttcaccccatagacaaacataaagaacatgaatcccattattcctaggttgttcattaggaattgtgccgtttcgggtttc |
200 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26855845 |
caataggcctggatccattttcacaccataaacaaacataaagaacatgaatcccattattcctaggttgttcattaggaattgtgccatttcgggtttc |
26855746 |
T |
|
| Q |
201 |
acatgtcgatgataccatttact |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26855745 |
acatgtcgatgataccatttact |
26855723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University