View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_high_6 (Length: 337)
Name: NF12772_high_6
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 36 - 322
Target Start/End: Complemental strand, 47680263 - 47679990
Alignment:
| Q |
36 |
gaaaattggagtgtcagaaatttgcaggtatggacaccaccataatcttgaggagaacaactgcatttggtcgcgcagcatctactccagatgtcatttt |
135 |
Q |
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| T |
47680263 |
gaaaattggagtgtcagaaatttgcaggtatggacaccaccataatcttgaggagaacaactgcatttggtcgcgcagcatctactccggatgtcatttt |
47680164 |
T |
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| Q |
136 |
cgattgtagatgcatcatttacttatnnnnnnnntatatctataaatggtgaattctttacattttcattctgtctaacgtgcttaggatactaaattac |
235 |
Q |
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| T |
47680163 |
cgattgtagatacatcatttacttataaaaaaa--atatctataaatggtgaattctttacattttcattctgtctaacgtgcttacgatagtaaattac |
47680066 |
T |
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| Q |
236 |
aaaattgcatcacggatatattccggataatgtgataggtaatagatatataaatagctgggttatttaaaaacatagatatataat |
322 |
Q |
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| T |
47680065 |
aaaattgcatca-----------cggataatgtgataggtaatagatatataaatagctgggttatttaaaaacatagatatataat |
47679990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 47691786 - 47691663
Alignment:
| Q |
189 |
ttctttacattttcattctgtctaacgtgcttaggatactaaattacaaaattgcatcacggatatattccggataatgtgataggtaatagatatataa |
288 |
Q |
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| T |
47691786 |
ttctttaaatattctttctgtctaacgtgcttacgatagtaaatcacaaaattgcacgacgaacatatcatggataatgtgataggtaatagatatgtaa |
47691687 |
T |
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| Q |
289 |
atagctgggttatttaaaaacata |
312 |
Q |
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| T |
47691686 |
ataattgggttatataaaaccata |
47691663 |
T |
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