View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12772_low_1 (Length: 811)
Name: NF12772_low_1
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 9 - 789
Target Start/End: Complemental strand, 6185959 - 6185183
Alignment:
| Q |
9 |
ggagaagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185959 |
ggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
6185860 |
T |
|
| Q |
109 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185859 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
6185760 |
T |
|
| Q |
209 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185759 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgcc |
6185660 |
T |
|
| Q |
309 |
ggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatcagtaacttaatctttcgatcgatattgactacaaaatcctctatttatac |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||| |||||| || |||| || || |||||| ||||||||||| |
|
|
| T |
6185659 |
ggtgtgaatgtcaaaatgattacaggtattactataatatctcatttatgagtaacttgatcttt-ga---atatcgaatataaaatcgtctatttatac |
6185564 |
T |
|
| Q |
409 |
atacgagtctatacgaaaatgatggcaaactttatttctgattataataggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattctt |
508 |
Q |
| |
|
|||| |||||| | |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6185563 |
atacaagtctacatgaaaatgatgccgaactttatctctgattataataggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattctt |
6185464 |
T |
|
| Q |
509 |
caacctaatcaggacacagatgaaacggtggttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtga |
608 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185463 |
caacctaatcaggacatagatgaaacggtggttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtga |
6185364 |
T |
|
| Q |
609 |
tggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcacc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185363 |
tggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcacc |
6185264 |
T |
|
| Q |
709 |
ggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttat |
789 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6185263 |
ggcattgaaagaagccgatatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttat |
6185183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 457 - 789
Target Start/End: Complemental strand, 4236391 - 4236059
Alignment:
| Q |
457 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacagatgaaacggtggttgaaggcgaacagttt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
4236391 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcgaacaattt |
4236292 |
T |
|
| Q |
557 |
cgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttctaatggttcaatgcttaa |
656 |
Q |
| |
|
|| ||||| || ||||||||||| || | || ||||| ||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4236291 |
cgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccatttgataaacttctaatggtacaatgcttaa |
4236192 |
T |
|
| Q |
657 |
aacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtac |
756 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
4236191 |
aacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctgatattggactttcaatgggaattcaaggtac |
4236092 |
T |
|
| Q |
757 |
agaagtagcaaaagagagttcagatattgttat |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4236091 |
tgaagtagcaaaagagagttcagatattgttat |
4236059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 4236866 - 4236517
Alignment:
| Q |
9 |
ggagaagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagca |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| | |
|
|
| T |
4236866 |
ggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagga |
4236767 |
T |
|
| Q |
109 |
ttattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagat |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | |||||| |
|
|
| T |
4236766 |
ttattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagat |
4236667 |
T |
|
| Q |
209 |
ggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgct |
308 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4236666 |
ggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgct |
4236567 |
T |
|
| Q |
309 |
ggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatc |
358 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
4236566 |
ggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatc |
4236517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 21847717 - 21847622
Alignment:
| Q |
9 |
ggagaagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
21847717 |
ggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 608 - 783
Target Start/End: Complemental strand, 38357184 - 38357009
Alignment:
| Q |
608 |
atggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcac |
707 |
Q |
| |
|
|||||||||||||| || | ||||||||| | ||||| |||||||||| | | ||||||||||||||||| || ||||| || || ||||||||||||| |
|
|
| T |
38357184 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
38357085 |
T |
|
| Q |
708 |
cggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatat |
783 |
Q |
| |
|
| || || |||||||| ||||| || ||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| |
|
|
| T |
38357084 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatat |
38357009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 692 - 789
Target Start/End: Complemental strand, 19593039 - 19592942
Alignment:
| Q |
692 |
ggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttat |
789 |
Q |
| |
|
|||| ||| |||||| | ||| |||||||||| |||| | ||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttat |
19592942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University