View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_10 (Length: 312)
Name: NF12772_low_10
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 40840649 - 40840515
Alignment:
| Q |
1 |
ctcatgttcattcattatccatgcatatatatctttggtcccttttttcttccttcacgtcatcctcaatatgtggcatgtcaattagatccaccataac |
100 |
Q |
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| T |
40840649 |
ctcatgttcattcattatccatgcatat----ctttggtcccttttttcttccttcacgtcatcctcaatatgtggcatgtcaattagatccaccataac |
40840554 |
T |
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| Q |
101 |
cagttcagggaccacgttttcacgtgacatacattacac |
139 |
Q |
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| T |
40840553 |
caggacagggaccacgttttcacgtgacatacattacac |
40840515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 40840518 - 40840408
Alignment:
| Q |
191 |
acacctgtcgtctcagccacgcattgatactccctcccggcaccatatccttcattcctctcctattattaacaaagaagatcgtgaccatacgcacatt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40840518 |
acacctgtcgtctcagccacgcattgatactccctcccggcaccatatccttcattcctctcctattattaacaaagaagatcgtgaccatacgcacatt |
40840419 |
T |
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| Q |
291 |
tcgtcattctt |
301 |
Q |
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||||||||||| |
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| T |
40840418 |
tcgtcattctt |
40840408 |
T |
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