View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12772_low_11 (Length: 311)

Name: NF12772_low_11
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12772_low_11
NF12772_low_11
[»] chr7 (1 HSPs)
chr7 (1-296)||(5936831-5937125)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 5937125 - 5936831
Alignment:
Q  1 actttgtatatagcataatattagagaagctccttatctcaccaataataacatcatagaatagtcacattaaacaaatggcagactttaacttaaatat 100  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5937125 actttgtatatagcataatattaaagaagctcattatctcaccaataataacatcatagaatagtcacattaaacaaatggcagactttaacttatatat 5937026  T
Q  101 acatacctcatgatattatccttggaagtataatgctatgtgactattctacatttcaattgttttcaaaagttgctaaagattgaggtttagttcatat 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5937025 acatacctcatgatattatcctttgaagtataatgctatgtgactattctacatttcaattgttttcaaaagttgctaaagattgaggtttagttcatat 5936926  T
Q  201 tgtttagtcataaataatggtcannnnnnnnnnnctctttctctttattcaaattgaatatatagttctgctgaagtttatataatatgaattatt 296  Q
    |||||||||||||||| ||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5936925 tgtttagtcataaatagtggtca-ttttttttttctctttctctttattcaaattgaatatatagttctgctgaagtttatataatatgaattatt 5936831  T

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