View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12772_low_12 (Length: 294)
Name: NF12772_low_12
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_12 |
 | |
|
| [»] scaffold0470 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0470 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 1661 - 1393
Alignment:
| Q |
11 |
gagagaagaaagacacaaaagagtggagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
110 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1661 |
gagagaagagagacacaaaagagtgaagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
1562 |
T |
|
| Q |
111 |
gattttctagttcattgatggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaagagaattactttaaagagatggaaaaacaaataaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1561 |
gattttctagttcattgatggatttgaaagagagagaaaaaattggggtttatagcaagtgaaagagaattacttttaagagatggaaaaacaaataaac |
1462 |
T |
|
| Q |
211 |
----ttaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1461 |
ttaattaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatc |
1393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 6612373 - 6612105
Alignment:
| Q |
11 |
gagagaagaaagacacaaaagagtggagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
110 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6612373 |
gagagaagagagacacaaaagagtgaagaagggatagagattttacgggttaagggaggtcgggggagtagagtcatgtacaaattaagattcatttata |
6612274 |
T |
|
| Q |
111 |
gattttctagttcattgatggatttgaaagagagnnnnnnnnttggggtttatagcaagtgaaagagaattactttaaagagatggaaaaacaaataaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6612273 |
gattttctagttcattgatggatttgaaagagagagaaaaaattggggtttatagcaagtgaaagagaattacttttaagagatggaaaaacaaataaac |
6612174 |
T |
|
| Q |
211 |
----ttaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6612173 |
ttaattaaagacttgtttggtacaatataatatcaagaacatcttgctatatattttttagttgaaatc |
6612105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 6585571 - 6585539
Alignment:
| Q |
203 |
aaataaacttaaagacttgtttggtacaatata |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6585571 |
aaataaacttaaagacttgtttggtacaatata |
6585539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 6660935 - 6660905
Alignment:
| Q |
226 |
gtacaatataatatcaagaacatcttgctat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6660935 |
gtacaatataatatcaagaacatcttgctat |
6660905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 6741337 - 6741307
Alignment:
| Q |
226 |
gtacaatataatatcaagaacatcttgctat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6741337 |
gtacaatataatatcaagaacatcttgctat |
6741307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 6582675 - 6582647
Alignment:
| Q |
228 |
acaatataatatcaagaacatcttgctat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6582675 |
acaatataatatcaagaacatcttgctat |
6582647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University