View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_16 (Length: 256)
Name: NF12772_low_16
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 4321926 - 4322153
Alignment:
| Q |
17 |
acaacccaccaaaacaaaaaccggnnnnnnnnnggaaccacaacaaggaaatgacagctaggagaggggctaaaaccacccc-------caacaaccgca |
109 |
Q |
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| T |
4321926 |
acaacccaccaaaacaaaaaccggaaaaaa---ggaaccacaacaaggaaatgacagctaggagaggggctaaaaccacccccaccccccaacaaccgca |
4322022 |
T |
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| Q |
110 |
tggcgtctaccaccacaaaaccctcctaggtcaaacacaagatgagttgcacctctccttcatagaaggagcaaggattcgaaaccatttccaagctaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
4322023 |
gggcgtctaccaccacaaaaccctcctaggtcaaacacaagatgagttgcacctctcattcatagaaggagcaaggactcaaaaccatttccaagctaaa |
4322122 |
T |
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| Q |
210 |
aatttcactctatccaccaccagctcatctg |
240 |
Q |
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||||||||| ||||||||||| ||||||||| |
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| T |
4322123 |
aatttcactatatccaccaccggctcatctg |
4322153 |
T |
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