View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_17 (Length: 250)
Name: NF12772_low_17
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46455746 - 46455984
Alignment:
| Q |
1 |
tttaacaaaatatgtagaggatattatatttcccaagcataataacaaaacatagcattcctttctattttcctgaggtttaccacttttattttataca |
100 |
Q |
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| T |
46455746 |
tttaacaaaatatgtagaggatattatatttcccaagcataataacaaaacatagtattcctttctattttcctgaggtttaccacttttattttataca |
46455845 |
T |
|
| Q |
101 |
ctttctaaatccaaatgtaagaaaaccgcattacttacattggcaaaaatccaaaacatgccattttactgcttgtagcataagacctatatatgagcaa |
200 |
Q |
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| T |
46455846 |
ctttctaaatccaaatgtaagaaaaccgcattacttacattggcaaaaatccaaaacatgcca-tttactgcttgtagcataagacctatatatgagcaa |
46455944 |
T |
|
| Q |
201 |
gtctgaacaaaaattcatatacggaaaaccactccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
46455945 |
gtctgaacaaaaattcatatacggaaaaccactccctatg |
46455984 |
T |
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