View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12772_low_19 (Length: 249)
Name: NF12772_low_19
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39676159 - 39676390
Alignment:
| Q |
1 |
ttgccgacgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676159 |
ttgccgacgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctata |
39676258 |
T |
|
| Q |
101 |
ttaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39676259 |
ttaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatgg |
39676358 |
T |
|
| Q |
201 |
caaccactgaaggttgtttagttgcaagtacc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39676359 |
caaccactgaaggttgtttagttgcaagtacc |
39676390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 10873691 - 10873483
Alignment:
| Q |
20 |
attaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgaga |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
10873691 |
attaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgaga |
10873592 |
T |
|
| Q |
120 |
tgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgttt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |
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|
| T |
10873591 |
tgcccatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgttt |
10873492 |
T |
|
| Q |
220 |
agttgcaag |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
10873491 |
ggttgcaag |
10873483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 10878762 - 10878554
Alignment:
| Q |
20 |
attaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgaga |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
10878762 |
attaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgaga |
10878663 |
T |
|
| Q |
120 |
tgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgttt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
10878662 |
tgcccatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgttt |
10878563 |
T |
|
| Q |
220 |
agttgcaag |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
10878562 |
ggttgcaag |
10878554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 10883833 - 10883625
Alignment:
| Q |
20 |
attaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgaga |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
10883833 |
attaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgaga |
10883734 |
T |
|
| Q |
120 |
tgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgttt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
10883733 |
tgcccatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgttt |
10883634 |
T |
|
| Q |
220 |
agttgcaag |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
10883633 |
ggttgcaag |
10883625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 10866614 - 10866822
Alignment:
| Q |
20 |
attaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgaga |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
10866614 |
attaggaaccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattaggacagtgttgcgaga |
10866713 |
T |
|
| Q |
120 |
tgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgttt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
10866714 |
tgccgatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgttt |
10866813 |
T |
|
| Q |
220 |
agttgcaag |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
10866814 |
ggttgcaag |
10866822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 10887752 - 10887543
Alignment:
| Q |
19 |
gattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgag |
118 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
10887752 |
gattaggaaccaagcagtggagagggttaccggaaggtcacttgaaggtttaccgatgaaaggttttgactacgattctatattaggacagtgttgcgag |
10887653 |
T |
|
| Q |
119 |
atgccaatagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtt |
218 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||| || |||||||||| |
|
|
| T |
10887652 |
atgccgatagggtttgttcaaattccggtgggtgttgccggtcctttgttgctcgacgggaatgaatacacggtgcccatggcaacaaccgaaggttgtt |
10887553 |
T |
|
| Q |
219 |
tagttgcaag |
228 |
Q |
| |
|
| |||||||| |
|
|
| T |
10887552 |
tggttgcaag |
10887543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 10046240 - 10046445
Alignment:
| Q |
26 |
aaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaa |
125 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| | |
|
|
| T |
10046240 |
aaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccga |
10046339 |
T |
|
| Q |
126 |
tagggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgc |
225 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
10046340 |
taggatttgttcagattccggtgggagttgccggacctttgttgcttgatgggaaagagtacacggtgccgatggcaacgacggaaggttgtttggttgc |
10046439 |
T |
|
| Q |
226 |
aagtac |
231 |
Q |
| |
|
|||||| |
|
|
| T |
10046440 |
aagtac |
10046445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 231
Target Start/End: Original strand, 37948116 - 37948285
Alignment:
| Q |
62 |
gaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtc |
161 |
Q |
| |
|
|||||||||||| | ||||| |||||||| || | || ||||| || ||||| || ||||| |||||| | |||| |||||||||||||| || || | |
|
|
| T |
37948116 |
gaaggtttaccattagaaggatttgattacgaagcgattttagggcagtgttgtgaaatgccggtagggtatattcaaattccggtgggtgtggcgggac |
37948215 |
T |
|
| Q |
162 |
ctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtac |
231 |
Q |
| |
|
| |||||| | ||||| |||||||| || |||||||| || || ||||| ||||| ||||| ||||| |
|
|
| T |
37948216 |
cattgttgttggatggatttgaatacactgttccaatggcgactacagaagggtgtttggttgctagtac |
37948285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 30709688 - 30709519
Alignment:
| Q |
62 |
gaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtc |
161 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
30709688 |
gaaggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgcgggtc |
30709589 |
T |
|
| Q |
162 |
ctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtac |
231 |
Q |
| |
|
| ||||| | ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
30709588 |
cactgttgttagatggagttgagtacactgtgcccatggctaccactgaagggtgtcttgttgcaagtac |
30709519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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