View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_20 (Length: 247)
Name: NF12772_low_20
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 46455622 - 46455393
Alignment:
| Q |
2 |
ttcaaagttaggtagtcaccactatagtgttagcactcacatgacaatcttgaaaatacaatcatatgccctcaaacaaataaccatttgcggtggtggt |
101 |
Q |
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| T |
46455622 |
ttcaaagttaggtagtcaccactatagtgttagcactcacatgacaatcttgaaaatacaatcatatgccctcaaacaaataaccatttggggtggtggt |
46455523 |
T |
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| Q |
102 |
ttttacctagtgtagttaagccacgttaatagcgataaaactagcttaagatttcttattttttgtctcaaatagcatcctttaacatctacgt-caaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46455522 |
ttttacctagtgtagttaagccacgttaatagcgataaaactagcttaagatttcttattttttgtctcaaatagcatcctttaacatctacgtccaaac |
46455423 |
T |
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| Q |
201 |
aagttcatgtttgaaaaatgttaacaataa |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
46455422 |
aagttcatgtttgaaaaatgttaacaataa |
46455393 |
T |
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