View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_21 (Length: 244)
Name: NF12772_low_21
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34423056 - 34422822
Alignment:
| Q |
1 |
ttaatgaacagaacctcgaagtaactgattttttcagtttttcctttcttcgt-aaaaaagacacagaactcttttatatagatgttccacgatatacaa |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34423056 |
ttaatgaacagaacctcgaagtaactaattttttcagtttttcctttcttcgttaaaaaagacacaaaactcttttatatagatgttccacgatatacaa |
34422957 |
T |
|
| Q |
100 |
tgacagaaatttgaggttagattagtttgacaacgctatttaacacaacagttnnnnnnntatacgcatgacataaaatagcattaaacaatgctacaga |
199 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34422956 |
tgacagaaagttgaggttagattagtttgacaacgctatttaacacaacagttgggggagtatacgcatgacataaaatagcattaaacaatgctacaga |
34422857 |
T |
|
| Q |
200 |
taataacataataagaggaatcaccttggtctgtg |
234 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
34422856 |
taataacataataataggaatcaccttggtctgtg |
34422822 |
T |
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