View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12772_low_28 (Length: 214)

Name: NF12772_low_28
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12772_low_28
NF12772_low_28
[»] chr8 (8 HSPs)
chr8 (18-167)||(16790982-16791134)
chr8 (19-166)||(16792895-16793045)
chr8 (19-111)||(16617261-16617353)
chr8 (19-165)||(16629585-16629734)
chr8 (19-165)||(16638466-16638615)
chr8 (20-63)||(15110408-15110451)
chr8 (19-111)||(16629277-16629369)
chr8 (19-111)||(16638158-16638250)
[»] chr4 (1 HSPs)
chr4 (22-134)||(38877741-38877856)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 16790982 - 16791134
Alignment:
Q  18 gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---t 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  16790982 gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaat 16791081  T
Q  115 gtaatttaaatactttagtggcaagacttcaccttcgagaacaataaaggtca 167  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16791082 gtaatttaaatactttagtggcaagacttcaccttcaagaacaataaaggtca 16791134  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 16792895 - 16793045
Alignment:
Q  19 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attg 115  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||   | ||    
T  16792895 caaaagtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatg 16792994  T
Q  116 taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggtc 166  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16792995 taatttaaatactttagtggcaagacttcgccttcgagaacaataaaggtc 16793045  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 16617261 - 16617353
Alignment:
Q  19 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||  |||||||| |||||||| ||||||||    
T  16617261 caaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata 16617353  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 16629585 - 16629734
Alignment:
Q  19 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg 115  Q
    |||||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| ||||||||||||||||   || |     
T  16629585 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16629684  T
Q  116 taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt 165  Q
    || || ||| ||||||||||| ||||| |||||||| ||  |||||||||    
T  16629685 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggt 16629734  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 16638466 - 16638615
Alignment:
Q  19 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg 115  Q
    |||||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| ||||||||||||||||   || |     
T  16638466 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16638565  T
Q  116 taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt 165  Q
    || || ||| ||||||||||| ||||| |||||||| ||  |||||||||    
T  16638566 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggt 16638615  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 15110451 - 15110408
Alignment:
Q  20 aaaggtggttgcaacaaagctgcgaggcattttctatcctgtgg 63  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  15110451 aaaggtggttgcaacaaagctgcgatgcattttccatcctgtgg 15110408  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 16629277 - 16629369
Alignment:
Q  19 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 111  Q
    |||||| ||||| | |||||  |||| |||| ||| ||||||||| ||||||| |||||||||||  |||||||  | |||||||||||||||    
T  16629277 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata 16629369  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 16638158 - 16638250
Alignment:
Q  19 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 111  Q
    |||||| ||||| | |||||  |||| |||| ||| ||||||||| ||||||| |||||||||||  |||||||  | |||||||||||||||    
T  16638158 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata 16638250  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 38877741 - 38877856
Alignment:
Q  22 aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaa 118  Q
    |||||||||||||||||||| ||||||||||| || |||||| |  |||| ||| |||||||  |||||||| ||||| ||||||||||   || |||||    
T  38877741 aggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaa 38877840  T
Q  119 tttaaatactttagtg 134  Q
     ||||| |||||||||    
T  38877841 attaaacactttagtg 38877856  T

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