View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_29 (Length: 209)
Name: NF12772_low_29
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 17831763 - 17831587
Alignment:
| Q |
14 |
atgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttgga |
113 |
Q |
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| T |
17831763 |
atgatgaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatcttaagcgttgga |
17831664 |
T |
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| Q |
114 |
gagggagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaact |
190 |
Q |
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| T |
17831663 |
gagggagataaactgagaataatgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaact |
17831587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 7135793 - 7135621
Alignment:
| Q |
18 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagg |
117 |
Q |
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| T |
7135793 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaagcgttggagagg |
7135694 |
T |
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| Q |
118 |
gagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaact |
190 |
Q |
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| T |
7135693 |
gagaaaaaatgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaact |
7135621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 52525319 - 52525386
Alignment:
| Q |
18 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttt |
85 |
Q |
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| T |
52525319 |
agaagaaggtgaaagtgaaaagatgaacaattttgggaatgcctgaacattcaacacctccaattttt |
52525386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 52525386 - 52525443
Alignment:
| Q |
133 |
tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaact |
190 |
Q |
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| T |
52525386 |
tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaact |
52525443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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