View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12772_low_3 (Length: 433)
Name: NF12772_low_3
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 36407224 - 36407633
Alignment:
| Q |
17 |
aaattttactctcatacatttcaaacaatacatcatgcgatatcaacaggtgcttatccctagttgtgactataattctactacctcgaccaaaccattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407224 |
aaattttactctcatacatttcaaacaatacatcatgcgatatcaacaggtgcttatccctagttgtgactataattctactacctcgaccaaaccattc |
36407323 |
T |
|
| Q |
117 |
ttggcttcctgccaaattctcaagttggcttttagaacttacatcatcaaggacaagaagaacctttttgttggataaaaggtttctcaagctgtccttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407324 |
ttggcttcctgccaaattctcaagttggcttttagaacttacatcatcaaggacaagaagaacctttttgttggataaaaggtttctcaagctgtccttt |
36407423 |
T |
|
| Q |
217 |
ccttggcttaatgtttcaattaccattccttttatgttcagatgagaaagaattttattttgtaactgttggagatattggtttctttccccagagacct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407424 |
ccttggcttaatgtttcaattaccattccttttatgttcagatgagaaagaattttattttgtaactgttggagatattggtttctttccccagagacct |
36407523 |
T |
|
| Q |
317 |
ctctgacattggcaatgaagcaacttacatcaaattggcttttaannnnnnngaagagagctgtagtaagagttgtttttcctatcccgcccatacccca |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407524 |
ctctgacattagcaatgaagcaacttacatcaaattggcttttaatttttttgaagagagctgtagtaagagttgtttttcctatcccgcccatacccca |
36407623 |
T |
|
| Q |
417 |
tatccctatg |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
36407624 |
tatccctatg |
36407633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 36398738 - 36398851
Alignment:
| Q |
313 |
acctctctgacattggcaatgaagcaacttacatcaaattggcttttaannnnnnngaagagagctgtagtaagagttgtttttcctatcccgcccatac |
412 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36398738 |
acctctctgacattggtaatgaagcaacttacatcaaattggcttttaatttttttgaagagagctgtagtaagagttgtttttcctatcccgcccatac |
36398837 |
T |
|
| Q |
413 |
cccatatccctatg |
426 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36398838 |
cccatatccctatg |
36398851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 11124158 - 11124282
Alignment:
| Q |
61 |
aacaggtgcttatccctagttgtgactataattctactacctcgaccaaaccattcttggcttcctgccaaattctcaagttggcttttagaacttacat |
160 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||| |||||| ||| |||||||||||||||| | || || |||||||| | ||||||| || |||| |
|
|
| T |
11124158 |
aacaagtgcttatctctacttgtgattataactctacttcctggaccaaaccattcttgcttcccagctaaattctccaattggcttaattcgctcacat |
11124257 |
T |
|
| Q |
161 |
catcaaggacaagaagaaccttttt |
185 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
11124258 |
catcaagaacaagaagaaccttttt |
11124282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 35685841 - 35685769
Alignment:
| Q |
130 |
aaattctcaagttggcttttagaacttacatcatcaaggacaagaagaacctttttgttggataaaaggtttc |
202 |
Q |
| |
|
|||||||| |||||| | | |||||||| ||||||||||||||| ||||| ||||| ||| ||| ||| |||| |
|
|
| T |
35685841 |
aaattctctagttggatatcagaacttagatcatcaaggacaaggagaacttttttattgaatagaagatttc |
35685769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 4358617 - 4358569
Alignment:
| Q |
67 |
tgcttatccctagttgtgactataattctactacctcgaccaaaccatt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| || ||||||||| |
|
|
| T |
4358617 |
tgcttatccctagttgtgatgataattctacttcctggagcaaaccatt |
4358569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University