View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_4 (Length: 420)
Name: NF12772_low_4
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 46680468 - 46680852
Alignment:
| Q |
9 |
agcagagacgacataatataatattgaaggcatgcgcgcatctttgac---gaaagtttgagacacagtcaacatcatatatccatgccatactctgcaa |
105 |
Q |
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| T |
46680468 |
agcagagacgacataatataatattgaaggcacgcgcgcatctttgactgagacagtttgagacacagtcaacatcatatatccatgccatactctccaa |
46680567 |
T |
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| Q |
106 |
tgcaatctaaaaactcctataaatacaattttatagtacaatgc-----aatctaacaaaccaactaaatcctactaccttgctttcataaatatttcta |
200 |
Q |
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| T |
46680568 |
tgcaatctaaaaactcctataaatacaattttatagtagaatgcaatctaatctaacaaaccaactaaatcctactaccttgctttcataaatatttcta |
46680667 |
T |
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| Q |
201 |
tttctgcaacaaattaatattcat--aaactttcagctttaattctctggcattccacataataacctgaccaaacttcaacttaattcccaaacatata |
298 |
Q |
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| T |
46680668 |
tttctgcaacaaattaatattcataaaaactttcagctttaattc--------------------cctgaccaaacttcaacttaattcccaaacatata |
46680747 |
T |
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| Q |
299 |
tttgatggagagaacacaatcatcacttctacagattcagcctcctacctatggaaacttagtgactatactaagcattgatggtggcggcattagggga |
398 |
Q |
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| T |
46680748 |
tttgatggagagaacacaatcatcacttctacagattcagcctcctacctatggcaacttagtaactatactaagcattgatggtggcggcattagggga |
46680847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 46676737 - 46676870
Alignment:
| Q |
270 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacagattcagcctcctacctatggaaacttagtgactatac |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
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| T |
46676737 |
caaacttcaacttaattcccaaacatatatttgatggagagaacacaatcatcacttctacaaattcagcctcctacctatgggaacttagtgactattc |
46676836 |
T |
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| Q |
370 |
taagcattgatggtggcggcattaggggaattat |
403 |
Q |
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| T |
46676837 |
taagcatcgacggtggtggtattaggggaattat |
46676870 |
T |
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