View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12772_low_5 (Length: 412)
Name: NF12772_low_5
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12772_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 404
Target Start/End: Complemental strand, 384808 - 384409
Alignment:
| Q |
5 |
tcctattaatcttcttcttcccactgacgttgtcgacaacaacaattatgagcaggatcgtcttctgggtgatattcagaaatataatcggctttttggt |
104 |
Q |
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| T |
384808 |
tcctattaatcttcttcttcccactgacgttgtcgacaacaacaattatgagcaggatagtcttctgggtgatattcagaaatataatcgtctttttggt |
384709 |
T |
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| Q |
105 |
gaacaatctaatgctagtagtgctgagagattacgtgatcttccgtttcttttaagaaggctttttagggattttgctaaccctaatgtgtcttttcctc |
204 |
Q |
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| T |
384708 |
gaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggctttttagggattttgctaaccctaatgtgtcttttcctc |
384609 |
T |
|
| Q |
205 |
ttgttatcagagctcgtatttttgttacggttagttcttcataactcctcaattannnnnnnactttgttgttgttgttgatgtttatattcaaattatc |
304 |
Q |
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| T |
384608 |
ttgttatcagagctcgtatttttgttacagttagttcttcataactcctcaactatttttttactttgttgttgttgttgatgtttatattcaaattatc |
384509 |
T |
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| Q |
305 |
attaggtagttgtgaatcgtgtcgggttggagatcattagtcagaatgttggaggtgacttcgaaccgttgttcctatgatcaatagcttccttcttctc |
404 |
Q |
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| T |
384508 |
attaggtagttgtgaatcgtgtcggattggagatcattagtcggaatgttggaggtgacttcgaaccgttgttcctatgatcaatagcttccttcttctc |
384409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 390188 - 389947
Alignment:
| Q |
5 |
tcctattaatcttcttcttcccactgacgttgtcgacaacaacaattatgagcaggatcgtct---tctgggtgatattcagaaatataatcggcttttt |
101 |
Q |
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| T |
390188 |
tcctattaaccttcttgttcccaccgacgtcgtagacgacgccaattctgagcaagatcgtttgaatttggctgatattcaaagatataaccgtgttttt |
390089 |
T |
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| Q |
102 |
ggtgaacaatctaatgctagtagtgctgagagattacgtgatcttccgtttcttttaagaaggctttttagggattttgctaaccctaatgtgtcttttc |
201 |
Q |
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| T |
390088 |
ggccaacaatctaatgctagtattgttcagagattacgtgatcttccttttcttttgaaaaggctttttaaggattttgttaaccctaatacttctcttc |
389989 |
T |
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| Q |
202 |
ctcttgttatcagagctcgtatttttgttacggttagttctt |
243 |
Q |
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| T |
389988 |
ctcttgttattagagctcgtgttttcattacggttagttctt |
389947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 389908 - 389857
Alignment:
| Q |
270 |
ttgttgttgttgttgatgtttatattcaaatt--atcattaggtagttgtga |
319 |
Q |
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| T |
389908 |
ttgttgttgttgttgttgtttatgttcaaattaaatcattaggtagtcgtga |
389857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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