View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12772_low_6 (Length: 388)

Name: NF12772_low_6
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12772_low_6
NF12772_low_6
[»] chr7 (23 HSPs)
chr7 (1-365)||(5937131-5937495)
chr7 (299-363)||(22801749-22801813)
chr7 (231-331)||(25956464-25956563)
chr7 (299-358)||(1885565-1885624)
chr7 (306-381)||(29910677-29910752)
chr7 (299-343)||(2144547-2144591)
chr7 (299-366)||(48964070-48964138)
chr7 (290-340)||(2143853-2143902)
chr7 (290-364)||(12843033-12843107)
chr7 (299-349)||(35238192-35238242)
chr7 (299-344)||(37820086-37820131)
chr7 (291-359)||(9050133-9050201)
chr7 (308-379)||(42720907-42720979)
chr7 (306-349)||(38134421-38134464)
chr7 (293-336)||(44172892-44172935)
chr7 (293-359)||(9037719-9037785)
chr7 (299-349)||(44317294-44317344)
chr7 (299-336)||(37775996-37776033)
chr7 (299-347)||(13094721-13094769)
chr7 (305-362)||(18678134-18678193)
chr7 (304-364)||(18750862-18750922)
chr7 (299-363)||(31808517-31808580)
chr7 (299-343)||(43243084-43243128)
[»] chr2 (21 HSPs)
chr2 (229-365)||(43585943-43586079)
chr2 (299-381)||(13501086-13501169)
chr2 (301-363)||(11439782-11439844)
chr2 (306-353)||(18570969-18571016)
chr2 (299-357)||(14373435-14373493)
chr2 (299-341)||(14450803-14450845)
chr2 (299-349)||(18512150-18512200)
chr2 (299-340)||(24067263-24067304)
chr2 (299-375)||(42665583-42665659)
chr2 (299-342)||(24067758-24067801)
chr2 (299-337)||(8300227-8300265)
chr2 (299-349)||(10535767-10535817)
chr2 (308-362)||(14268750-14268804)
chr2 (299-365)||(33884036-33884102)
chr2 (299-357)||(44984658-44984716)
chr2 (290-343)||(37211884-37211937)
chr2 (308-349)||(40681983-40682024)
chr2 (304-336)||(13558774-13558806)
chr2 (299-351)||(16630794-16630846)
chr2 (305-349)||(26787812-26787856)
chr2 (299-359)||(44605147-44605207)
[»] chr8 (16 HSPs)
chr8 (299-365)||(26915248-26915314)
chr8 (271-363)||(42874509-42874601)
chr8 (299-370)||(24295145-24295216)
chr8 (299-374)||(27733823-27733898)
chr8 (299-365)||(10497824-10497890)
chr8 (299-349)||(34073986-34074036)
chr8 (300-364)||(22600515-22600579)
chr8 (307-344)||(6960692-6960729)
chr8 (299-340)||(31119097-31119138)
chr8 (317-380)||(4114229-4114292)
chr8 (309-362)||(14227210-14227263)
chr8 (308-369)||(29519176-29519237)
chr8 (299-378)||(10002171-10002251)
chr8 (299-344)||(2652345-2652389)
chr8 (327-379)||(9945241-9945293)
chr8 (306-369)||(16230105-16230169)
[»] scaffold0024 (1 HSPs)
scaffold0024 (299-371)||(18116-18188)
[»] chr6 (24 HSPs)
chr6 (299-371)||(10031549-10031621)
chr6 (290-345)||(6751881-6751936)
chr6 (299-358)||(19369809-19369868)
chr6 (299-355)||(5579649-5579705)
chr6 (304-363)||(31430267-31430326)
chr6 (258-364)||(7265560-7265666)
chr6 (299-364)||(20809629-20809694)
chr6 (308-369)||(29959159-29959217)
chr6 (299-361)||(31327803-31327866)
chr6 (304-363)||(34868170-34868229)
chr6 (304-369)||(8623186-8623251)
chr6 (299-364)||(10760850-10760914)
chr6 (237-349)||(1334662-1334774)
chr6 (299-363)||(16503662-16503726)
chr6 (308-364)||(17168480-17168536)
chr6 (299-363)||(22745945-22746008)
chr6 (306-364)||(13211296-13211354)
chr6 (269-344)||(26402658-26402735)
chr6 (299-336)||(10157998-10158035)
chr6 (310-363)||(17422274-17422327)
chr6 (299-364)||(21395316-21395380)
chr6 (299-363)||(4859121-4859185)
chr6 (299-347)||(16516944-16516992)
chr6 (317-357)||(32297976-32298016)
[»] chr4 (26 HSPs)
chr4 (299-381)||(37496673-37496755)
chr4 (299-349)||(44362667-44362717)
chr4 (290-344)||(13307883-13307937)
chr4 (304-365)||(43093538-43093599)
chr4 (299-365)||(11797636-11797705)
chr4 (290-349)||(13117430-13117489)
chr4 (306-363)||(33950123-33950180)
chr4 (299-371)||(9988707-9988779)
chr4 (309-349)||(28663493-28663533)
chr4 (306-381)||(5654606-5654681)
chr4 (306-349)||(18513256-18513299)
chr4 (299-346)||(20119949-20119996)
chr4 (306-349)||(34589721-34589764)
chr4 (299-330)||(47492399-47492430)
chr4 (299-341)||(10164862-10164904)
chr4 (303-365)||(10634975-10635037)
chr4 (290-343)||(13484030-13484084)
chr4 (289-363)||(20743277-20743350)
chr4 (306-359)||(43476790-43476844)
chr4 (299-336)||(683066-683103)
chr4 (299-364)||(16303274-16303339)
chr4 (306-371)||(55941018-55941083)
chr4 (304-336)||(8457939-8457971)
chr4 (299-339)||(22799901-22799941)
chr4 (306-334)||(40224513-40224541)
chr4 (308-364)||(44796979-44797035)
[»] chr1 (24 HSPs)
chr1 (299-364)||(24176805-24176871)
chr1 (299-369)||(40686766-40686836)
chr1 (299-358)||(40176595-40176654)
chr1 (304-364)||(14332395-14332454)
chr1 (301-369)||(24462280-24462348)
chr1 (299-360)||(12558874-12558938)
chr1 (299-340)||(18946042-18946083)
chr1 (299-379)||(26777385-26777466)
chr1 (299-364)||(28170368-28170432)
chr1 (306-358)||(3921659-3921711)
chr1 (308-364)||(6427336-6427392)
chr1 (299-375)||(18556034-18556110)
chr1 (290-361)||(31667414-31667485)
chr1 (318-364)||(22794105-22794151)
chr1 (299-365)||(26462653-26462719)
chr1 (290-339)||(7888106-7888155)
chr1 (299-336)||(8203835-8203872)
chr1 (317-358)||(24806937-24806978)
chr1 (290-363)||(38078660-38078733)
chr1 (299-364)||(48450595-48450660)
chr1 (309-349)||(6895111-6895151)
chr1 (308-336)||(41017421-41017449)
chr1 (289-349)||(42004946-42005005)
chr1 (299-363)||(43328454-43328518)
[»] chr5 (21 HSPs)
chr5 (306-364)||(26205775-26205833)
chr5 (301-366)||(30080511-30080576)
chr5 (313-358)||(309150-309195)
chr5 (299-365)||(19167584-19167651)
chr5 (299-349)||(21319953-21320003)
chr5 (306-364)||(32444752-32444810)
chr5 (301-358)||(7621245-7621302)
chr5 (299-348)||(38784808-38784857)
chr5 (306-359)||(43208289-43208342)
chr5 (306-358)||(16881128-16881180)
chr5 (299-363)||(24906309-24906373)
chr5 (306-349)||(2577195-2577238)
chr5 (299-358)||(10010546-10010605)
chr5 (306-357)||(11596470-11596521)
chr5 (314-353)||(18919045-18919084)
chr5 (304-343)||(42192283-42192322)
chr5 (303-349)||(9031937-9031983)
chr5 (299-341)||(16207599-16207641)
chr5 (310-379)||(28296298-28296368)
chr5 (306-363)||(2039864-2039921)
chr5 (308-364)||(5467995-5468051)
[»] chr3 (15 HSPs)
chr3 (299-356)||(49179723-49179780)
chr3 (304-358)||(34409355-34409409)
chr3 (308-381)||(41319327-41319400)
chr3 (303-345)||(14338495-14338537)
chr3 (289-353)||(27903629-27903692)
chr3 (291-374)||(19323448-19323531)
chr3 (298-336)||(17568690-17568728)
chr3 (320-369)||(3180793-3180842)
chr3 (284-349)||(6984765-6984830)
chr3 (301-354)||(42076759-42076812)
chr3 (304-345)||(52558141-52558182)
chr3 (276-332)||(1502592-1502648)
chr3 (293-361)||(4946206-4946274)
chr3 (306-358)||(25074781-25074833)
chr3 (304-336)||(42667634-42667666)
[»] scaffold0314 (1 HSPs)
scaffold0314 (299-350)||(8948-8999)
[»] scaffold0504 (1 HSPs)
scaffold0504 (299-344)||(8705-8750)
[»] scaffold0007 (1 HSPs)
scaffold0007 (299-364)||(225276-225341)
[»] scaffold0004 (1 HSPs)
scaffold0004 (299-364)||(92793-92858)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 5937131 - 5937495
Alignment:
Q  1 taatttttaagtccactcctttgtagatggtcctaataatgaatgaatagtatacagtagaatgaaagtgagtagacaattagtgaagtacccctgatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5937131 taatttttaagtccactcctttgtagatggtcctaataatgaatgaatagtatacagtagaatgaaagtgagtagacaatttgtgaagtacccctgatga 5937230  T
Q  101 aaaaatgctgtactttgattcaagattcttagtggcttcaaatgagacaaagggaagagctaaattgaaaaagagcagtactgtttaattactatcatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5937231 aaaaatgctgtactttgattcaagattcttagtggcttcaaatgagacaaagggaagagctaaattgaaaaagagcagtactgtttaattactatcatgt 5937330  T
Q  201 ttgaaaattgaatcattgaagagggagaacctctattgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatac 300  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  5937331 ttgaaaattgaatcattgaagagggagaatctctattgcacggacacttcatattgaaggcgtattctggtgtccgacatgtatcgtgaccgacacagac 5937430  T
Q  301 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  5937431 acttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgtca 5937495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 22801749 - 22801813
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    ||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  22801749 acacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgtgtccgtgt 22801813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 331
Target Start/End: Complemental strand, 25956563 - 25956464
Alignment:
Q  231 ctctattgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcatttt 330  Q
    |||||||||||| |||||||  ||||||||||| | | | |||||||| ||||| ||| |||||||  ||||||||||||||||| ||||||||||||||    
T  25956563 ctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 25956465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 1885624 - 1885565
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||| || |||||    
T  1885624 acacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtc 1885565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 29910752 - 29910677
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtgct 381  Q
    |||||||||| |||| ||||||||||||||| ||  | ||||||  |||||||||||||||||||||||| |||||    
T  29910752 tgattacattcaattctgtcattttctcaaatttccaccggtgtccacgtgtcagtgtcatgtctgtgtcggtgct 29910677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 2144547 - 2144591
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttat 343  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  2144547 acacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 48964070 - 48964138
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggt-gttgacgtgtcagtgtcat 366  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||||| || | ||||||||| |||||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattttatctgtggctgacgtgtctgtgtcat 48964138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 2143853 - 2143902
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattt 340  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  2143853 ccgacacat-cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 12843033 - 12843107
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    ||||| || |||| |||||||| ||| |||||||||||||||||||| |  || |||| ||||||||||||||||    
T  12843033 ccgacccagacacgtgtgattatattcaattatgtcattttctcaaattaataccggtcttgacgtgtcagtgtc 12843107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 35238192 - 35238242
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||| |||||||| ||| |||||||||||||||||||||| ||||||||||    
T  35238192 acacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgt 35238242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 37820131 - 37820086
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatc 344  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||    
T  37820131 acacttgcgattacattaaattatgttattttttcaaaattttatc 37820086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 9050133 - 9050201
Alignment:
Q  291 cgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtca 359  Q
    ||||||| |||| |||||||| ||| || ||||||||||| |||||||||||||  ||| |||||||||    
T  9050133 cgacacagacacatgtgattatattgaactatgtcattttttcaaaattttatctatgtcgacgtgtca 9050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 42720907 - 42720979
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctg-tgtctgtg 379  Q
    |||||||| |||||||| ||||| ||||| | ||| ||||||  |||||||||||||||||||| ||||||||    
T  42720907 attacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtcatgtctgatgtctgtg 42720979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 38134421 - 38134464
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||||| |||||||||||||||||||| | ||||||||||    
T  38134421 tgattacattgaattatgtcattttctcaaattattatcggtgt 38134464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 44172892 - 44172935
Alignment:
Q  293 acacatacacttgtgattacattaaattatgtcattttctcaaa 336  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||    
T  44172892 acacaaacacatgtgattacattgaattatgtcattttctcaaa 44172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 9037719 - 9037785
Alignment:
Q  293 acacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtca 359  Q
    ||||| |||| |||||||| ||| || ||| ||||||| |||||||||||||  |||||||||||||    
T  9037719 acacagacacatgtgattatattgaactatatcattttttcaaaattttatctatgttgacgtgtca 9037785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 44317294 - 44317344
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||| |||||||||| |||||||||||||| | ||||||||||| ||||    
T  44317294 acacttatgattacattgaattatgtcatttttttaaaattttatcagtgt 44317344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 37776033 - 37775996
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaa 336  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  37776033 acacatgtgattacatttaattatgtcattttctcaaa 37775996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 13094721 - 13094769
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggt 347  Q
    ||||| ||||||||||| |||||| |  |||||||||||||||||||||    
T  13094721 acactagtgattacattgaattatatagttttctcaaaattttatcggt 13094769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 18678193 - 18678134
Alignment:
Q  305 gtgattacattaaattatgtcattttctcaaa--attttatcggtgttgacgtgtcagtg 362  Q
    ||||||| ||| ||||||||||||||||||||  ||||||   |||||||||||||||||    
T  18678193 gtgattatattgaattatgtcattttctcaaaatattttactagtgttgacgtgtcagtg 18678134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 18750922 - 18750862
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||||||| |||||||||||||||| ||| | ||| || ||| || |||||||||||    
T  18750922 tgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgtc 18750862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 31808517 - 31808580
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||| |||||||||||| | || ||||||||||||||| | |||||||||  |||||||||||||    
T  31808517 acacatgtgattacattgacttgtgtcattttctcaaattattatcggtg-cgacgtgtcagtgt 31808580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 43243128 - 43243084
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttat 343  Q
    |||||||| ||||||||||||||||| |||| ||||| |||||||    
T  43243128 acacttgtaattacattaaattatgttatttcctcaacattttat 43243084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 365
Target Start/End: Original strand, 43585943 - 43586079
Alignment:
Q  229 acctctattgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcatt 328  Q
    |||||| ||||||| |||||||  |||||||| || | |  ||||| |||  |||| ||| |||||||  ||||||||||||||||| ||||||||||||    
T  43585943 acctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatt 43586042  T
Q  329 ttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43586043 ttctcaaaattttatctgtgttgacgtgtcagtgtca 43586079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 13501086 - 13501169
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtct-gtgtctgtgct 381  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||| || || ||||| ||||  ||||| |||||||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgttgtgtctggtgtctgtgct 13501169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 11439844 - 11439782
Alignment:
Q  301 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    ||||||||||||| | |||||||| ||||||||| |||||||||| | |||||||||||||||    
T  11439844 acttgtgattacactgaattatgttattttctcataattttatcgattttgacgtgtcagtgt 11439782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 18571016 - 18570969
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgac 353  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||    
T  18571016 tgattacattgaattatgtcattttctcaaattattatcggtgttgac 18570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 14373435 - 14373493
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgt 357  Q
    |||| |||||||||||| ||||||||||||   |||||||||||| |||||||||||||    
T  14373435 acacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgttgacgtgt 14373493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 14450803 - 14450845
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaatttt 341  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  14450803 acacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 18512150 - 18512200
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||| |||||||||||| |||||| | ||||||||||||||||||||||||    
T  18512150 acacatgtgattacattgaattatattattttctcaaaattttatcggtgt 18512200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 24067304 - 24067263
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattt 340  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  24067304 acacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 42665659 - 42665583
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtc 375  Q
    |||| |||||||||||| ||| ||||||| || |||||||||||||| | | ||||||||| |||| ||| ||||||    
T  42665659 acacatgtgattacattgaatcatgtcatcttttcaaaattttatcgatatcgacgtgtcaatgtcgtgtttgtgtc 42665583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 24067801 - 24067758
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaatttta 342  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||    
T  24067801 acacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 8300227 - 8300265
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaa 337  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  8300227 acacttatgattacactaaattatgtcattttctcaaaa 8300265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 10535767 - 10535817
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||| |||||||| | |||||||||||||||||||| | ||||||||||    
T  10535767 acacttatgattacactgaattatgtcattttctcaaattattatcggtgt 10535817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 14268750 - 14268804
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtg 362  Q
    ||||| || ||||| |||||||||||||| | ||| |||||||||||||||||||    
T  14268750 attacgttcaattaagtcattttctcaaattattaccggtgttgacgtgtcagtg 14268804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 33884102 - 33884036
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    |||||||| |||||| | ||| |||||||||||||| |||||||||||| | || ||||| ||||||    
T  33884102 acacttgtaattacactgaatcatgtcattttctcacaattttatcggtatcgatgtgtctgtgtca 33884036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 44984658 - 44984716
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgt 357  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||| || ||||| |||||||    
T  44984658 acacttgtgatcacattgaattatatcattttttcaaaatttgataggtgtcgacgtgt 44984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 37211884 - 37211937
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttat 343  Q
    |||||| | |||||||| |||||||| |||| |||||||||||| |||||||||    
T  37211884 ccgacatagacacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 40682024 - 40681983
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||| |||||||||||||||||||| | ||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtgt 40681983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 13558774 - 13558806
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaa 336  Q
    ||||||| |||||||||||||||||||||||||    
T  13558774 tgtgattgcattaaattatgtcattttctcaaa 13558806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 16630846 - 16630794
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttg 351  Q
    |||| |||||||| ||| |||||||||||||||| ||| | ||||||||||||    
T  16630846 acacatgtgattaaattgaattatgtcattttcttaaattattatcggtgttg 16630794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 26787812 - 26787856
Alignment:
Q  305 gtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    ||||||||||  |||||||||||||||||||| |||||| |||||    
T  26787812 gtgattacatcgaattatgtcattttctcaaatttttattggtgt 26787856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 44605147 - 44605207
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtca 359  Q
    |||| ||| |||||||| |||||||| ||||||||||| | |||| || ||||||||||||    
T  44605147 acacatgtaattacattgaattatgttattttctcaaattattattggcgttgacgtgtca 44605207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 26915248 - 26915314
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  26915248 acacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtca 26915314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 363
Target Start/End: Complemental strand, 42874601 - 42874509
Alignment:
Q  271 tgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||||| ||| ||||| || ||||  ||||||||||||||||| |||||||||||||||||||||| ||| |||||| |||||||| ||||    
T  42874601 tgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgt 42874509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 24295145 - 24295216
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtct 370  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||| |||||||||| |||||    
T  24295145 acacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgacatgtcagtgtcgtgtct 24295216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 27733898 - 27733823
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgt 374  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| || |||| ||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattttatcggtgttggcttgtcagtatcgtgtccgtgt 27733823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 10497824 - 10497890
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||| |||| | |||||| ||||||    
T  10497824 acacttgtgattacatcaaattatgttattttctcaaaattttatccgtgtcggcgtgtctgtgtca 10497890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 34073986 - 34074036
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  34073986 acacttatgattacattaaattatgtcattttttcaaaattttatcggtgt 34074036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 22600579 - 22600515
Alignment:
Q  300 cacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||| |||||||| |||||||||||    
T  22600579 cacttgtgattatattgaattatgtcattttctttaaattttattggtgttgatgtgtcagtgtc 22600515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 6960692 - 6960729
Alignment:
Q  307 gattacattaaattatgtcattttctcaaaattttatc 344  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattttatc 6960729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 31119138 - 31119097
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattt 340  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  31119138 acacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 4114229 - 4114292
Alignment:
Q  317 aattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtgc 380  Q
    |||||||||||||||||||| | |||||||  |||||||||||||||| ||| ||||| |||||    
T  4114229 aattatgtcattttctcaaattattatcggcattgacgtgtcagtgtcgtgtttgtgtttgtgc 4114292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 14227263 - 14227210
Alignment:
Q  309 ttacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtg 362  Q
    ||||||| |||||||| ||||||||||| | |||| ||||||||||||||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgttgacgtgtcagtg 14227210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 29519237 - 29519176
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc 369  Q
    |||||||| |||||| | ||||| | ||| | ||||||||||||||||||||||||||||||    
T  29519237 attacattgaattatatgattttttaaaattattatcggtgttgacgtgtcagtgtcatgtc 29519176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 10002171 - 10002251
Alignment:
Q  299 acacttgtgattacattaaattatgtca-ttttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgt 378  Q
    |||| ||||||||||||||||||||||| |||| ||||| | ||||||||||  |||||  |||||| |||| ||||||||    
T  10002171 acacatgtgattacattaaattatgtcatttttttcaaattattatcggtgtcaacgtgctagtgtcgtgtccgtgtctgt 10002251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 2652389 - 2652345
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatc 344  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||    
T  2652389 acacttgtgattacattaa-ttatgtcattttctaaaaaatttatc 2652345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 9945293 - 9945241
Alignment:
Q  327 ttttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtg 379  Q
    |||||||||| | |||||| ||| |||||||| ||||| ||||||||||||||    
T  9945293 ttttctcaaactattatcgatgtcgacgtgtctgtgtcgtgtctgtgtctgtg 9945241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 16230105 - 16230169
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgtt-gacgtgtcagtgtcatgtc 369  Q
    |||||| |||||||||||||||||||| ||| | |||| | |||| |||||||| ||||||||||    
T  16230105 tgattatattaaattatgtcattttctaaaattattattgttgttagacgtgtccgtgtcatgtc 16230169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 18116 - 18188
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctg 371  Q
    ||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  18116 acacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctg 18188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 10031621 - 10031549
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctg 371  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgtttgtgtcatgtctg 10031549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 6751881 - 6751936
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcg 345  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6751881 ccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 19369868 - 19369809
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  19369868 acacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtc 19369809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 5579705 - 5579649
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgt 355  Q
    |||||||||| |||||| || |||||||||||||||||||||||||||||| |||||    
T  5579705 acacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtcgacgt 5579649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 31430326 - 31430267
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||    
T  31430326 tgtgattacatttaatcatgtcattttctcaaaattttattggtgttgacatgtaagtgt 31430267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 7265560 - 7265666
Alignment:
Q  258 aggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgt 357  Q
    |||| ||||| |||||| ||| ||||||||| |||||||  |||| | | |||||| | |||||||| ||||||||||| | ||| |||||||| |||||    
T  7265560 aggcatattccggtgtcggacatgtattgtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgt 7265659  T
Q  358 cagtgtc 364  Q
    |||||||    
T  7265660 cagtgtc 7265666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 20809694 - 20809629
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||||||||| ||| ||||||| | ||| |||||||||||||||||| |||||| |||||||    
T  20809694 acacttgtgattaccttagattatgttaatttttcaaaattttatcggtgtcgacgtgacagtgtc 20809629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 29959217 - 29959159
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc 369  Q
    |||||||| ||||||||||||||||||||||||||||   ||||||||||| ||||| ||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatc---gttgacgtgtcggtgtcgtgtc 29959159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 31327866 - 31327803
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaa-ttttatcggtgttgacgtgtcagt 361  Q
    |||||||||||| ||||||||||||| ||||||| |||| |||||| | |||||||||||||||    
T  31327866 acacttgtgattgcattaaattatgtaattttcttaaaatttttattgatgttgacgtgtcagt 31327803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 34868170 - 34868229
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||||||||| |||||||  ||| |||||||||||||||||||| ||||||| |||||    
T  34868170 tgtgattacattgaattatgatattctctcaaaattttatcggtgtcgacgtgttagtgt 34868229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 8623251 - 8623186
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc 369  Q
    |||||||||||| ||| |||||||||||| ||| | ||||||||||  ||||||||||||| ||||    
T  8623251 tgtgattacattcaatgatgtcattttctaaaattgttatcggtgtcaacgtgtcagtgtcgtgtc 8623186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 10760850 - 10760914
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||| |||||||||||| ||| |||||||||||||||| | ||||| |||| ||||||||||||||    
T  10760850 acacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 1334774 - 1334662
Alignment:
Q  237 tgcacgtacacttcatattgaaggcgtattctggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcattttctcaaa 336  Q
    |||||| |||||||  |||||||| || | ||||||| ||||  | || |||  ||||||  ||| ||||||||||||| ||||||||| |||| |||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacaccgacatttgtgattacattgaattatgtccttttttcaaa 1334675  T
Q  337 attttatcggtgt 349  Q
    |||||||| ||||    
T  1334674 attttatccgtgt 1334662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 16503726 - 16503662
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    ||||| ||||||||||| |||||| |  |||||||||||||||||||||  ||| ||||||||||    
T  16503726 acactagtgattacattgaattatatagttttctcaaaattttatcggttatgaagtgtcagtgt 16503662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 17168480 - 17168536
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||| |||||||| ||||||||||||| | ||||| |||||| ||||||||||||    
T  17168480 attacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgtc 17168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 22746008 - 22745945
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    ||||||||||||||||| || |||  |||||||||||||||||||| |||| || ||||||||||    
T  22746008 acacttgtgattacattgaaatataacattttctcaaaattttatc-gtgtcgatgtgtcagtgt 22745945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 13211296 - 13211354
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||| |||||||||||||||||||||||| | |||||  ||| |||||||| |||||    
T  13211296 tgattatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtc 13211354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 26402658 - 26402735
Alignment:
Q  269 ggtgtccgacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtca--ttttctcaaaattttatc 344  Q
    ||||||| || ||||| ||| |||||||  ||||||||||||||| | ||||||||||  |||| |||||||||||||    
T  26402658 ggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcattttttttcaaaattttatc 26402735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 10158035 - 10157998
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaa 336  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  10158035 acacatgtgattacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 17422274 - 17422327
Alignment:
Q  310 tacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||| |||||| ||||||||||||| | |||||||||| ||||||| |||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 21395316 - 21395380
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||| |||||||||| ||||||||||| | ||| |||||||| |||||| |||||    
T  21395316 acacttgtaattacactaaattatgt-attttctcaaattattagcggtgttggcgtgtcggtgtc 21395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 4859121 - 4859185
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||| ||||||||||||  ||||||||||||||||||| | |||| ||||| ||| ||| |||||    
T  4859121 acacgtgtgattacattggattatgtcattttctcaaattattattggtgtcgacatgttagtgt 4859185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 16516992 - 16516944
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggt 347  Q
    ||||| ||||||||||| |||||| |  |||||||||||||||||||||    
T  16516992 acactagtgattacattgaattatatagttttctcaaaattttatcggt 16516944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 32298016 - 32297976
Alignment:
Q  317 aattatgtcattttctcaaaattttatcggtgttgacgtgt 357  Q
    |||||| ||||||||||||||||| |||||||| |||||||    
T  32298016 aattatatcattttctcaaaatttgatcggtgtcgacgtgt 32297976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 37496755 - 37496673
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtgct 381  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||  ||||||||||||| |||| |||| ||||||    
T  37496755 acacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtcgtgtccgtgtttgtgct 37496673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 44362717 - 44362667
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44362717 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 44362667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 13307937 - 13307883
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatc 344  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  13307937 ccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 43093538 - 43093599
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    |||||||||||| ||||||| |||||| ||||| | |||| |||||||||||||||||||||    
T  43093538 tgtgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtca 43093599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 11797636 - 11797705
Alignment:
Q  299 acacttgtgattacattaaattatgtca---ttttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    ||||||||||||||||||||||||||||   |||| |||||||||||| |||||||| ||| | ||||||    
T  11797636 acacttgtgattacattaaattatgtcatttttttttcaaaattttattggtgttgatgtgcccgtgtca 11797705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 13117489 - 13117430
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||  ||||||||||||||||| |||| |||||||||||| ||||||||| |||||    
T  13117489 ccgacaccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgt 13117430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 33950180 - 33950123
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    ||||||||||||||||||| ||||||||||| | ||| ||| ||||| ||||||||||    
T  33950180 tgattacattaaattatgtgattttctcaaattattagcggcgttgaagtgtcagtgt 33950123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 9988707 - 9988779
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctg 371  Q
    |||| |||||||||||| ||||||||||||||||||||    || | |||| ||||||||| |||||||||||    
T  9988707 acacatgtgattacattcaattatgtcattttctcaaataactacctgtgtggacgtgtcaatgtcatgtctg 9988779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 28663533 - 28663493
Alignment:
Q  309 ttacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgt 28663493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 5654606 - 5654681
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtgct 381  Q
    |||||||||| |||||||||||||||||||| | ||||| |||| ||| |||| |||   |||| |||||||||||    
T  5654606 tgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgtgctttgtccgtgtctgtgct 5654681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 18513256 - 18513299
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||||| |||||||||||||||||||| | ||||||||||    
T  18513256 tgattacattgaattatgtcattttctcaaattattatcggtgt 18513299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 20119996 - 20119949
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcgg 346  Q
    |||| ||||||||||||||||||| ||||||||||||| | |||||||    
T  20119996 acacatgtgattacattaaattatttcattttctcaaattattatcgg 20119949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 34589721 - 34589764
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||||| |||||||||||||||||||| | ||||||||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgt 34589764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 47492430 - 47492399
Alignment:
Q  299 acacttgtgattacattaaattatgtcatttt 330  Q
    ||||||||||||||||||||||||||||||||    
T  47492430 acacttgtgattacattaaattatgtcatttt 47492399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 10164862 - 10164904
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaatttt 341  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  10164862 acacttgtgattacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 10635037 - 10634975
Alignment:
Q  303 ttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    ||||||| ||||| |||||||||||||| ||||||||||||| || | |||||| | ||||||    
T  10635037 ttgtgataacattgaattatgtcattttttcaaaattttatcagtatcgacgtgcccgtgtca 10634975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 13484084 - 13484030
Alignment:
Q  290 ccgacacatacacttgtgattacatta-aattatgtcattttctcaaaattttat 343  Q
    |||||||  |||||||||||||||||  |||||||| ||||||||||||||||||    
T  13484084 ccgacactgacacttgtgattacatttgaattatgttattttctcaaaattttat 13484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 20743277 - 20743350
Alignment:
Q  289 accgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    ||||||||| |||| | |||||||| | |||||||||||||||||||| | ||||| |||| | |||||||||||    
T  20743277 accgacaca-acacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 43476844 - 43476790
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaatt-ttatcggtgttgacgtgtca 359  Q
    ||||||||||||||||||||||| |||||||||| |||| | ||| |||||||||    
T  43476844 tgattacattaaattatgtcattctctcaaaattattattgatgtcgacgtgtca 43476790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 683103 - 683066
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaa 336  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  683103 acacatgtgattacattcaattatgtcattttctcaaa 683066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 16303274 - 16303339
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||| |||||||| ||||||| ||||||| |||||  ||| | ||||||||||||    
T  16303274 acacttgtaattacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtc 16303339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 55941018 - 55941083
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctg 371  Q
    |||||| | |||||||||| ||||||| ||| | |||| ||||||||||| | |||||||||||||    
T  55941018 tgattatactaaattatgtaattttcttaaattattattggtgttgacgtataagtgtcatgtctg 55941083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 8457971 - 8457939
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaa 336  Q
    |||||||||||| ||||||||||||||||||||    
T  8457971 tgtgattacattcaattatgtcattttctcaaa 8457939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 22799901 - 22799941
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaatt 339  Q
    |||| |||||||||||| |||||||||||||||| ||||||    
T  22799901 acacgtgtgattacattgaattatgtcattttctaaaaatt 22799941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 40224513 - 40224541
Alignment:
Q  306 tgattacattaaattatgtcattttctca 334  Q
    |||||||||||||||||||||||||||||    
T  40224513 tgattacattaaattatgtcattttctca 40224541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 44796979 - 44797035
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||||| ||||||||||| | || ||||||||||| |||| |||||    
T  44796979 attacattgaattatgttattttctcaaattattgtcggtgttgacatgtctgtgtc 44797035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 24176871 - 24176805
Alignment:
Q  299 acacttgtgattacattaaattatgtcatttt-ctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  24176871 acacttgtgattacattaaatcatgtcatttttctcaaaattttatcggtgttgacgtgtcaatgtc 24176805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 40686766 - 40686836
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc 369  Q
    |||||| |||||||||| |||||| ||||||| |||||||||||||| ||| |||||||||||||||||||    
T  40686766 acacttatgattacattgaattatatcattttatcaaaattttatcgatgtcgacgtgtcagtgtcatgtc 40686836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 40176654 - 40176595
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  40176654 acacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgtgtc 40176595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 14332454 - 14332395
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||| ||||||    
T  14332454 tgtgattacattgaattatgtcattttctc-aaattttatcggtgtcgacttgttagtgtc 14332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 24462280 - 24462348
Alignment:
Q  301 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc 369  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||| |||| ||||| || ||||| ||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtcgacgtatctgtgtcgtgtc 24462348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 12558874 - 12558938
Alignment:
Q  299 acacttgtgattacattaaatta---tgtcattttctcaaaattttatcggtgttgacgtgtcag 360  Q
    ||||||||||||||||| || ||   ||||||||| ||||||||||||||||| |||||||||||    
T  12558874 acacttgtgattacatttaactactatgtcattttatcaaaattttatcggtgctgacgtgtcag 12558938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 18946042 - 18946083
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattt 340  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  18946042 acactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 26777385 - 26777466
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaatt-ttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtg 379  Q
    |||| |||||||||||| ||||| |||||||| |  ||||| |||||||||||||| | |||||||| |||| |||||||||    
T  26777385 acacatgtgattacattcaattaagtcatttttttcaaattattatcggtgttgacttctcagtgtcgtgtcagtgtctgtg 26777466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 28170432 - 28170368
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||||| |||||||||||||| |||||||||||| |||||  ||| |||||||||    
T  28170432 acacttgttattacattgaattatgtcatttt-tcaaaattttattggtgtccacgcgtcagtgtc 28170368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 3921711 - 3921659
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||||||||| |||||||||||||||||||| | |||| | ||||||||||||    
T  3921711 tgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtc 3921659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 6427392 - 6427336
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||||| ||||||||||| | ||| |||||||| ||||||||||||    
T  6427392 attacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 18556034 - 18556110
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtc 375  Q
    |||| |||||||||| | |||||||||||||| | ||| | ||| |||||||||||| ||| |||||||| ||||||    
T  18556034 acacatgtgattacagtcaattatgtcattttattaaattattaccggtgttgacgtttcactgtcatgtatgtgtc 18556110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 31667485 - 31667414
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagt 361  Q
    |||||||  |||| |||||||||||| |||||||||||||||| ||| | ||| | |||||||| |||||||    
T  31667485 ccgacaccgacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgacatgtcagt 31667414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 22794105 - 22794151
Alignment:
Q  318 attatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    ||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  22794105 attatgtcattttttcaaattattatccgtgttgacgtgtcagtgtc 22794151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 26462653 - 26462719
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    |||| |||||||||||| |||||| ||||||||| ||| | ||||| |||| |||||||| ||||||    
T  26462653 acacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtgtca 26462719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 7888155 - 7888106
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaatt 339  Q
    |||||||  |||||||||||||||||||||||||  | ||||||||||||    
T  7888155 ccgacaccgacacttgtgattacattaaattatgcgagtttctcaaaatt 7888106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 8203872 - 8203835
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaa 336  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  8203872 acacttgtgattacattcacttatgtcattttctcaaa 8203835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 24806978 - 24806937
Alignment:
Q  317 aattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||||||| |||||||||||||||||||  ||||||||||||    
T  24806978 aattatgttattttctcaaaattttatccatgttgacgtgtc 24806937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 38078660 - 38078733
Alignment:
Q  290 ccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||||  |||||||| |||||||| |||||||| ||||| ||||| | ||| | |||| |||||||||||||    
T  38078660 ccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgt 38078733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 48450595 - 48450660
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||| |||||||||| ||||| ||||| | ||| | |||||| ||||||||||||    
T  48450595 acacttgtaattacactaaattatgttattttttcaaattattagctgtgttggcgtgtcagtgtc 48450660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 6895151 - 6895111
Alignment:
Q  309 ttacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||| ||||||||||||||| |||||||| |||||||    
T  6895151 ttacattacattatgtcattttcttaaaattttgtcggtgt 6895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 41017421 - 41017449
Alignment:
Q  308 attacattaaattatgtcattttctcaaa 336  Q
    |||||||||||||||||||||||||||||    
T  41017421 attacattaaattatgtcattttctcaaa 41017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 42004946 - 42005005
Alignment:
Q  289 accgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    ||||||||| |||| | |||||||| |||||||||||||||||||||| | ||||| ||||    
T  42004946 accgacaca-acacctatgattacactaaattatgtcattttctcaaattattatccgtgt 42005005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 43328518 - 43328454
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||| |||| |||||||||||||| ||||||||||||| | ||||  ||||  ||||||||||||    
T  43328518 acacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgt 43328454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 26205775 - 26205833
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  26205775 tgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtc 26205833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 30080511 - 30080576
Alignment:
Q  301 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcat 366  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||| ||| | || |||||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacatttccgtgtcat 30080576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 309195 - 309150
Alignment:
Q  313 attaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  309195 attacattatgtcattttctcaaaattttatcggtgtcgacgtgtc 309150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 19167584 - 19167651
Alignment:
Q  299 acacttgtgattacattaaattatgtca-ttttctcaaaattttatcggtgttgacgtgtcagtgtca 365  Q
    ||||||||||||||||| |||| ||||| |||| ||||||||||||||||||  ||||||| ||||||    
T  19167584 acacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtca 19167651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 21319953 - 21320003
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||| ||||    
T  21319953 acacttgtgattacattgaattatatcattttttcaaaattttatccgtgt 21320003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 32444810 - 32444752
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||||| ||||||||||| |||||||| | |||  ||||||||||||||||||||    
T  32444810 tgattacattgaattatgtcatcttctcaaattgttaatggtgttgacgtgtcagtgtc 32444752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 7621245 - 7621302
Alignment:
Q  301 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||||||||||||||||||||||||| ||| |  |||||||||| |||| ||||||||    
T  7621245 acttgtgattacattaaattatgtcaatttttttaaattttatctgtgtcgacgtgtc 7621302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 38784857 - 38784808
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtg 348  Q
    ||||||||||||||||| |||||| ||||||| ||| |||||||||||||    
T  38784857 acacttgtgattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 43208289 - 43208342
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtca 359  Q
    |||||||||| |||||||||||||||||||| |  |||||||||||| ||||||    
T  43208289 tgattacattgaattatgtcattttctcaaattactatcggtgttgatgtgtca 43208342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 16881180 - 16881128
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    ||||||||||||||||||||||||| ||||| | |||| ||| ||||||||||    
T  16881180 tgattacattaaattatgtcattttttcaaattattatgggtattgacgtgtc 16881128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 24906309 - 24906373
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||||| |||||| | |||||||||||||| ||||| | ||||| |||||| |||||||||||    
T  24906309 acacttgtaattacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 2577195 - 2577238
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  2577195 tgattacactaaattatgtcattttctcaaattattatcggtgt 2577238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 10010605 - 10010546
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||| |||||||||| | |||||||||||||| ||||||||||||  ||||||| |||||    
T  10010605 acacatgtgattacaatgaattatgtcattttttcaaaattttattagtgttgaggtgtc 10010546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 11596470 - 11596521
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgt 357  Q
    |||||||||| |||||||||||||||||||| | |||||||| | |||||||    
T  11596470 tgattacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 18919045 - 18919084
Alignment:
Q  314 ttaaattatgtcattttctcaaaattttatcggtgttgac 353  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  18919045 ttaaattatgtcattttctcaaattattatcggtgttgac 18919084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 343
Target Start/End: Complemental strand, 42192322 - 42192283
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttat 343  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattttat 42192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 9031937 - 9031983
Alignment:
Q  303 ttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||||||||    
T  9031937 ttgtgattagattgaattatgtcatttcctcaaaaatttatcggtgt 9031983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 16207599 - 16207641
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaatttt 341  Q
    ||||||||||||||||| |||||||||| |||||| |||||||    
T  16207599 acacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 28296368 - 28296298
Alignment:
Q  310 tacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc-tgtgtctgtg 379  Q
    |||||| |||||||||||||||||||| | |||||||||| ||| ||||  |||| |||| ||||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtcttgtgtctgtg 28296298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 2039864 - 2039921
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgt 363  Q
    |||||||||| ||| |||||||||||||||| | ||| |||||| |||||||| ||||    
T  2039864 tgattacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtccgtgt 2039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 5467995 - 5468051
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||| | |||||||| ||||| ||||| | |||||||| ||||||||||||||||    
T  5467995 attacactgaattatgtgattttatcaaattattatcggtattgacgtgtcagtgtc 5468051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 49179723 - 49179780
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtg 356  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||    
T  49179723 acacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtcgacgtg 49179780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 34409355 - 34409409
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||||||||||| ||||||||||||||||| || | |||||||||||||||||||    
T  34409355 tgtgattacattgaattatgtcattttctcgaagtattatcggtgttgacgtgtc 34409409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 41319327 - 41319400
Alignment:
Q  308 attacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgtctgtgct 381  Q
    |||||||| |||||||||||||| ||||| | |||| ||||| |||||||| ||||| |||||| |||||||||    
T  41319327 attacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtctgagtctgtgct 41319400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 14338495 - 14338537
Alignment:
Q  303 ttgtgattacattaaattatgtcattttctcaaaattttatcg 345  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  14338495 ttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 27903692 - 27903629
Alignment:
Q  289 accgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgac 353  Q
    ||||||||| |||||| ||||||||||||||||| || |||||||||| | ||||| ||||||||    
T  27903692 accgacaca-acacttatgattacattaaattatatcgttttctcaaattattatctgtgttgac 27903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 19323448 - 19323531
Alignment:
Q  291 cgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtctgtgt 374  Q
    |||||| ||||| |||||||| ||| |||||||||||||||||||| |  |||| |||| ||| ||| |||||| |||| ||||    
T  19323448 cgacacttacacatgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgacatgttagtgtcgtgtccgtgt 19323531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 17568690 - 17568728
Alignment:
Q  298 tacacttgtgattacattaaattatgtcattttctcaaa 336  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  17568690 tacacttgtaattacattaaattatgtaattttctcaaa 17568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 3180793 - 3180842
Alignment:
Q  320 tatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtcatgtc 369  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||| ||||    
T  3180793 tatgtcattttcttaaaattttatcattgtagacgtgtcagtgtcctgtc 3180842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 6984830 - 6984765
Alignment:
Q  284 ttgtgaccgacacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgt 349  Q
    ||||| |||||||  || |||||||||| ||| |||| ||| |||||||||||||||||| |||||    
T  6984830 ttgtgtccgacaccgactcttgtgattatattgaattgtgttattttctcaaaattttattggtgt 6984765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 42076759 - 42076812
Alignment:
Q  301 acttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacg 354  Q
    ||||||||||||||| ||||| ||||||||| || ||||||||| | |||||||    
T  42076759 acttgtgattacattgaattaggtcattttcccacaattttatcagcgttgacg 42076812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 52558141 - 52558182
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaaattttatcg 345  Q
    |||||||||||| ||||||||| |||||||||| ||||||||    
T  52558141 tgtgattacattgaattatgtccttttctcaaatttttatcg 52558182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 1502648 - 1502592
Alignment:
Q  276 gacgtgtattgtgaccgacacatacacttgtgattacattaaattatgtcattttct 332  Q
    |||||||  |||| || ||||| |||| |||||||||||| ||||||||||||||||    
T  1502648 gacgtgttctgtgtccaacacagacacatgtgattacattcaattatgtcattttct 1502592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 4946206 - 4946274
Alignment:
Q  293 acacatacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagt 361  Q
    ||||| |||| |||||||||||| |||||| ||||||||| |||||  ||| || || |||||||||||    
T  4946206 acacagacacatgtgattacattcaattatatcattttcttaaaatagtatgggagtagacgtgtcagt 4946274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 25074833 - 25074781
Alignment:
Q  306 tgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtc 358  Q
    |||||||| | |||||||||||||||||||| | |||||||||| | ||||||    
T  25074833 tgattacactcaattatgtcattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 42667666 - 42667634
Alignment:
Q  304 tgtgattacattaaattatgtcattttctcaaa 336  Q
    |||||||| ||||||||||||||||||||||||    
T  42667666 tgtgattatattaaattatgtcattttctcaaa 42667634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 8999 - 8948
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtt 350  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  8999 acacttgtgattacgttgaattatgtcattttctcaaaattttatcgatgtt 8948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 8705 - 8750
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatc 344  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  8705 acacttgtggttacattgaatcatgtcattttctcaaaattttatc 8750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 225276 - 225341
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||| | ||||||||  ||||||||||||||||||| | ||||| |||| | ||||||||||||    
T  225276 acacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 92858 - 92793
Alignment:
Q  299 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgttgacgtgtcagtgtc 364  Q
    |||||||| |||||| | |||||||| ||||||||||| | ||| |||||| | ||||||||||||    
T  92858 acacttgtaattacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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