View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12772_low_8 (Length: 327)

Name: NF12772_low_8
Description: NF12772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12772_low_8
NF12772_low_8
[»] chr5 (3 HSPs)
chr5 (38-324)||(1592527-1592811)
chr5 (38-324)||(7955111-7955414)
chr5 (38-118)||(7771195-7771275)
[»] chr4 (6 HSPs)
chr4 (38-324)||(27366215-27366518)
chr4 (38-324)||(30200560-30200863)
chr4 (38-324)||(48944796-48945107)
chr4 (38-215)||(45113227-45113421)
chr4 (38-126)||(1838761-1838849)
chr4 (1-37)||(29420874-29420910)
[»] chr8 (4 HSPs)
chr8 (38-316)||(15362425-15362719)
chr8 (38-324)||(18166304-18166607)
chr8 (38-309)||(20266162-20266450)
chr8 (38-309)||(21052791-21053079)
[»] chr7 (3 HSPs)
chr7 (38-324)||(21868018-21868321)
chr7 (41-267)||(47022949-47023191)
chr7 (38-119)||(4057881-4057962)
[»] chr2 (3 HSPs)
chr2 (38-324)||(12335743-12336046)
chr2 (174-239)||(604160-604225)
chr2 (42-118)||(604298-604374)
[»] chr1 (2 HSPs)
chr1 (38-324)||(34024766-34025069)
chr1 (38-243)||(34917359-34917581)
[»] chr3 (3 HSPs)
chr3 (38-324)||(34147433-34147742)
chr3 (38-121)||(28983925-28984008)
chr3 (225-298)||(28983852-28983925)
[»] chr6 (2 HSPs)
chr6 (88-126)||(28888188-28888226)
chr6 (85-119)||(21091509-21091543)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 1592527 - 1592811
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaatcttatttatcc 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  1592527 agataaaaaatatatttctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccatgaatctaatttaccc 1592626  T
Q  138 gttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaaacctacccataccccta 237  Q
    |||||||||||||||||| |||             ||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||    
T  1592627 gttgactctctatttttaatcc-gggggtggcgggctggaatcttcaattcc-gggaatgaaatctccacattcatggcgaaaatccacccataccccta 1592724  T
Q  238 ttttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctctgctc 324  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1592725 ttttactcgcgcttcttccctcctcatttttcccacgcgttttctaaattaatagaaacccacatatatataaacccctctttgctc 1592811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 7955111 - 7955414
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||               
T  7955111 agataaaaaatatattcctgggtataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatacccaggaataaatgattccc 7955210  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| ||||||||||||||||||||||||             ||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  7955211 aggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgagaatgaaatctccacattcatgacgaaa 7955310  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7955311 acccacccatacccctattttacccacgcttcttccctcctaatttttcccacgcgttttctaaattaatagaaacccacatatatataaacccctcttt 7955410  T
Q  321 gctc 324  Q
    ||||    
T  7955411 gctc 7955414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 7771275 - 7771195
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatac 118  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7771275 agataaaaaatatattcttaggaataaggacattaaatacgatatttctatgtttggtagaaggaaacaaaaataatatac 7771195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 27366518 - 27366215
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||               
T  27366518 agataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaggaataaatgattttc 27366419  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| ||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27366418 aggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 27366319  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  27366318 acccacccatacccctattttacccgcgcttcttccctcctaatttttcccatgcgttttctaaattaatagaaacccacatatatataaacccctcttt 27366219  T
Q  321 gctc 324  Q
    ||||    
T  27366218 gctc 27366215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 30200863 - 30200560
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||               
T  30200863 agataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatactcaggaataaatgattctc 30200764  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| |||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||| ||||    
T  30200763 aggaatcttatttacccgttgactctctatttttattctcgggggtggggggatggaatcttcaattcctgggaatgaaatctccacattcatggcgaaa 30200664  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||| |||||| ||||||||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |    
T  30200663 acccacccatgcccctattttacctgcgcttcttccctcctaatttttcccacacgttttctaaattaatagaaacccacatatatttaaacccctcttt 30200564  T
Q  321 gctc 324  Q
    ||||    
T  30200563 gctc 30200560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 48945107 - 48944796
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatata-----------------ccc 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||                 |||    
T  48945107 agataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccaggaataaatgattccc 48945008  T
Q  121 aagaatcttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatgg----- 215  Q
    | |||||||||| | || ||||||||||||||||||||||            |||||||||||||||||||| ||||||||||||||||| ||||         
T  48945007 aggaatcttattaacccattgactctctatttttattccttgggttggggggctggaatcttcaattcctggaaatgaaatctccacatttatggtgaaa 48944908  T
Q  216 --tgaaaacctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacat--atatataaa 311  Q
      |||||||| ||||||| ||||||||||| | | ||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||    
T  48944907 attgaaaacccacccatatccctattttac-cccactttttccctcctaatttttcccactcattttccaaattaatagaaacccacatacatatataaa 48944809  T
Q  312 cccctctctgctc 324  Q
    ||||||| |||||    
T  48944808 cccctctttgctc 48944796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 45113421 - 45113227
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatac-----------------cc 120  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  45113421 agataaaaaatatattcctgagaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaggaataaatgatttcc 45113322  T
Q  121 aagaatcttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatgg 215  Q
    | |||||||||||| ||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  45113321 aggaatcttatttacccgttgactctctatttttattcccggaggtggggggctggaatcttcaattcctgggaatgaaatctccacattcatgg 45113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 1838849 - 1838761
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat 126  Q
    |||||||||||||||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  1838849 agataaaaaatatatttctaggaataagggcattaaatacgatattcctatatttggtagaagggaacaaaaataatatacccaggaat 1838761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29420874 - 29420910
Alignment:
Q  1 taacttgggaggagggaataatttcattaaaatttta 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  29420874 taacttgggaggagggaataatttcattaaaatttta 29420910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 38 - 316
Target Start/End: Original strand, 15362425 - 15362719
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||               
T  15362425 agataaaaaatatattcctgggaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatacccaggaataaatgattccc 15362524  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15362525 aggaatcttatttatccgttgactctctatttttattcc-aggggtggggggctggaatcttcaattcctgggaatgaaatctccacattcatggcgaaa 15362623  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccct 316  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15362624 acccacccatacccctattttacccgcgcttcttccctcctaatttttcccacgcgttttctaaattaatagaaacccacatatatataaacccct 15362719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 18166304 - 18166607
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  18166304 agataaaaaatatattcctgtgaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaataaatgattcac 18166403  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| |||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18166404 aggaatcttatttacccgttgactctctatttttattctcgggggtggtgggctggaatcttcaattcctgggaatgaaatctccacattcatggcgaaa 18166503  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||| ||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  18166504 acccacccataccgctattttacccgcgcttcttccctcctaatttttcccacgcgttttctaaattaatagaaacccacgtatatataaacccctcttt 18166603  T
Q  321 gctc 324  Q
    ||||    
T  18166604 gctc 18166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 38 - 309
Target Start/End: Original strand, 20266162 - 20266450
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||               
T  20266162 agataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccaggaataattgattccc 20266261  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| ||||||||||||||||||||||||             ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20266262 aggaatcttatttacccgttgactctctatttttattcccgagggtggggggctggaatcttcaattcctgagaatgaaatctccacattcatggtgaaa 20266361  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatata 309  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||    
T  20266362 acccacccatacccctattttacccgcgcttcttccctcctaatttttcccatgcgttttctaaattaatagaaactcatatatatata 20266450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 38 - 309
Target Start/End: Original strand, 21052791 - 21053079
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||               
T  21052791 agataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccaggaataattgattccc 21052890  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| ||||||||||||||||||||||||             ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21052891 aggaatcttatttacccgttgactctctatttttattcccgagggtggggggctggaatcttcaattcctgagaatgaaatctccacattcatggtgaaa 21052990  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatata 309  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||    
T  21052991 acccacccatacccctattttacccgcgcttcttccctcctaatttttcccatgcgttttctaaattaatagaaactcatatatatata 21053079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 21868321 - 21868018
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||               
T  21868321 agataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacctaggaataaatgattcct 21868222  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| ||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21868221 aggaatcttatttacccgttgactctctatttttattcccgggggtggtgggctggaatcttcaattcctgggaatgaaatctccacattcatggcgaaa 21868122  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||  ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  21868121 actcacccatacccctattttacccgcgcttcttccctcctaatttttcccatgcgttttctaaattaatagaaacccacatatatataaacccctcttt 21868022  T
Q  321 gctc 324  Q
    ||||    
T  21868021 gctc 21868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 41 - 267
Target Start/End: Original strand, 47022949 - 47023191
Alignment:
Q  41 taaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatataccca-----------------ag 123  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||                 ||    
T  47022949 taaaaaatatattactgagaataagggtattaaatacaatattcctatatttggtagaagggaacaaaaataatatacccaggaataaaatgattcccag 47023048  T
Q  124 aatcttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaaacc 223  Q
    ||||||||| ||||||||||||||||||||||||| |            |||||||||||||||||||| |||||||||| |||||||||| | ||||||    
T  47023049 aatcttattaatccgttgactctctatttttattc-tcgggggtgggggctggaatcttcaattcctggaaatgaaatcttcacattcatgctaaaaacc 47023147  T
Q  224 tacccatacccctattttactcgcgcttcttccctcctaatttt 267  Q
     ||||||||| ||||||||| |||||||||||||||||||||||    
T  47023148 cacccatacctctattttacccgcgcttcttccctcctaatttt 47023191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 4057881 - 4057962
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacc 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4057881 agataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 4057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 12335743 - 12336046
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    ||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||               
T  12335743 agataaaaaatatattcctggaaataagagcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatacccaggaataaatgattccc 12335842  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| ||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12335843 aggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgggaatgaaatctccacattcatggcgaaa 12335942  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12335943 acccacccatacccctattttacccgcgcttcttccctcctaatttttcccacgcgttttctaaattaatagaaacccacatatatataaacccctcttt 12336042  T
Q  321 gctc 324  Q
    ||||    
T  12336043 gctc 12336046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 604225 - 604160
Alignment:
Q  174 tggaatcttcaattcctgggaatgaaatctccacattcatggtgaaaacctacccatacccctatt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  604225 tggaatcttcaattcctgggaatgaaatctccacattcatggtgaaaacccacccatacctctatt 604160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 604374 - 604298
Alignment:
Q  42 aaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatac 118  Q
    ||||||||||||  || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  604374 aaaaaatatatttatgagaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatac 604298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 34024766 - 34025069
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaagaat----------- 126  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||               
T  34024766 agataaaaaatatattcctgggaataaaggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatatactcaggaataaatgattctc 34024865  T
Q  127 ------cttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
          |||||||| |||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34024866 aggaatcttatttacccgttgactctctatttttattctcgggggtggtgggctggaatcttcaattcctgggaatgaaatctccacattcatggcgaaa 34024965  T
Q  221 acctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacatatatataaacccctctct 320  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |    
T  34024966 acccacccatacccctattttactcgcgcttcttccctcctaatttttcccatgcgttttctaaattaatagaaacccacgtatatataaacccctcttt 34025065  T
Q  321 gctc 324  Q
    ||||    
T  34025066 gctc 34025069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 243
Target Start/End: Original strand, 34917359 - 34917581
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatata-----------------ccc 120  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                 |||    
T  34917359 agataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccaggaataaatgattccc 34917458  T
Q  121 aagaatcttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 220  Q
    | |||||||||||| ||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34917459 aggaatcttatttacccgttgactctctatttttattcccgggggtggggggctggaatcttcaattcctgggaatgaaatctccacattcatggtgaaa 34917558  T
Q  221 acctacccatacccctattttac 243  Q
    | | |||||||||||||||||||    
T  34917559 atccacccatacccctattttac 34917581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 34147433 - 34147742
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatata-----------------ccc 120  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||                 |||    
T  34147433 agataaaaaatatattcctgggaataatggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacctaggaataaatgattccc 34147532  T
Q  121 aagaatcttatttatccgttgactctctatttttattcctnnnnnnnnnnnnctggaatcttcaattcctgggaatgaaatctccacattcatgg----- 215  Q
    | |||||||||| | || ||||  ||||||||||||||||            |||||||||||||||||||| ||||||||||||||||| ||||         
T  34147533 aggaatcttattaacccattga--ctctatttttattcctggggttggggggctggaatcttcaattcctggaaatgaaatctccacatttatggtgaaa 34147630  T
Q  216 --tgaaaacctacccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaacccacat--atatataaa 311  Q
      |||||||| ||||||| ||||||||||| | | ||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||    
T  34147631 attgaaaacccacccatatccctattttac-cccactttttccctcctaatttttcccactcattttccaaattaatagaaacccacatacatatataaa 34147729  T
Q  312 cccctctctgctc 324  Q
    ||||||| |||||    
T  34147730 cccctctttgctc 34147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 28984008 - 28983925
Alignment:
Q  38 agataaaaaatatattcctgggaataagggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatataccca 121  Q
    ||||||||||||||||  || ||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  28984008 agataaaaaatatatttatgagaataagggcattaaatacgatattcctatgtttggtagaagcgaacaaaaaaaatataccca 28983925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 28983925 - 28983852
Alignment:
Q  225 acccatacccctattttactcgcgcttcttccctcctaatttttctcacgcgttttctaaattaatagaaaccc 298  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  28983925 acccatacccctattttacccgtgcttcttccctcctaatttttcccacgcgttttccaaattaatataaaccc 28983852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 28888226 - 28888188
Alignment:
Q  88 tgtttggtagaagggaacaaaaataatatacccaagaat 126  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  28888226 tgtttggtagaaaggaacaaaaataatatacccaagaat 28888188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 21091509 - 21091543
Alignment:
Q  85 ctatgtttggtagaagggaacaaaaataatatacc 119  Q
    ||||||||||||||| |||||||||||||||||||    
T  21091509 ctatgtttggtagaaaggaacaaaaataatatacc 21091543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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