View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_high_10 (Length: 313)
Name: NF12773_high_10
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 25739264 - 25739540
Alignment:
| Q |
22 |
aattcgctggtataggctggggaggttctttctttggattctttgctgctgttgctgctatgtacgttgcctttaactctatctgacaccgacatatata |
121 |
Q |
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| T |
25739264 |
aattcgctggtataggctggggaggttctttctttggattctttgctgctgttgctgctatgtacgttacctttaactctatccgacaccgacatatata |
25739363 |
T |
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| Q |
122 |
attacatcgtgtcctgagtagtgcttcataggctctatctattaatttatcatcatttgccattttattcatgtctgtattaattctttcattttttaca |
221 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25739364 |
attacatcgtgtcctgagtcgtgcttcataggctctatctattaatttatcatcatttaccattttattcatgtctgtattaattctttcattttttaca |
25739463 |
T |
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| Q |
222 |
actatatttttgtaaattgatgttatatgtgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagt |
298 |
Q |
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| T |
25739464 |
actatatttttgtaaattgatgttatatatgtccaacatcgtaggtatgtttaaggttgttgtttgtgtgttaaagt |
25739540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 25742847 - 25743001
Alignment:
| Q |
42 |
ggaggttctttctttggattctttgctgctgttgctgctatgtacgttgcctttaactctatctgacaccgacatatataattacatcgtgtcctgagta |
141 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||| | | | ||| |
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| T |
25742847 |
ggagcttctttcttcggattctttgctgctgttgctgctatgtacgtt-cctttaactctatccgataccgacacatataattacattgaattatacgta |
25742945 |
T |
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| Q |
142 |
---------gtgcttcataggctctatctattaatttatcatcatttgccatttta |
188 |
Q |
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| T |
25742946 |
cttctgtctgtgcttcatagactctatctattaatttatcatcatttgcaatttta |
25743001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 25743099 - 25743150
Alignment:
| Q |
251 |
tgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcat |
302 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||| |||||||| |
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| T |
25743099 |
tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagttcat |
25743150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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