View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12773_high_4 (Length: 483)

Name: NF12773_high_4
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12773_high_4
NF12773_high_4
[»] chr4 (7 HSPs)
chr4 (297-466)||(23259999-23260168)
chr4 (297-466)||(11134927-11135096)
chr4 (297-466)||(27543923-27544092)
chr4 (297-466)||(23277897-23278066)
chr4 (183-282)||(33754247-33754345)
chr4 (253-295)||(14800360-14800404)
chr4 (253-288)||(47825599-47825634)
[»] chr7 (7 HSPs)
chr7 (297-464)||(12280071-12280238)
chr7 (222-294)||(44660056-44660128)
chr7 (253-296)||(25533962-25534005)
chr7 (253-295)||(21358377-21358419)
chr7 (202-295)||(12003283-12003377)
chr7 (202-295)||(21453133-21453227)
chr7 (56-95)||(12003135-12003174)
[»] chr1 (4 HSPs)
chr1 (1-132)||(52801660-52801791)
chr1 (255-294)||(48183914-48183953)
chr1 (253-295)||(26354696-26354739)
chr1 (170-203)||(52801798-52801831)
[»] chr8 (3 HSPs)
chr8 (219-296)||(43915827-43915902)
chr8 (56-95)||(34213059-34213098)
chr8 (253-296)||(1667822-1667867)
[»] chr5 (6 HSPs)
chr5 (219-295)||(43299937-43300014)
chr5 (253-296)||(3173849-3173893)
chr5 (253-295)||(18740038-18740081)
chr5 (253-296)||(21745035-21745080)
chr5 (253-296)||(42740890-42740935)
chr5 (253-295)||(32863333-32863377)
[»] chr2 (1 HSPs)
chr2 (253-295)||(25697957-25697998)
[»] scaffold0005 (1 HSPs)
scaffold0005 (253-295)||(39323-39367)
[»] chr6 (2 HSPs)
chr6 (56-95)||(14654743-14654782)
chr6 (253-295)||(16497562-16497606)
[»] chr3 (3 HSPs)
chr3 (253-296)||(2339181-2339226)
chr3 (253-282)||(2733346-2733375)
chr3 (253-295)||(52893141-52893185)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 297 - 466
Target Start/End: Complemental strand, 23260168 - 23259999
Alignment:
Q  297 ggtggatcgtactatgctaggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 396  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260168 ggtggatcgtactatgcttggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 23260069  T
Q  397 ttccgaggtactctgattcttctaaggttgcttatgttcttcaaggtaacgaaactttcatgatctaatt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23260068 ttccgaggtactctgattcttctaaggttgcttatgttcttcaaggtaaccaaactttcatgatctaatt 23259999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 297 - 466
Target Start/End: Original strand, 11134927 - 11135096
Alignment:
Q  297 ggtggatcgtactatgctaggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 396  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  11134927 ggtggatcgtactatgcttggtctccttctgagcttcctatgttacgtgaaggtaacattggtgctgccaagttagctcttgagaagaatggttttgctg 11135026  T
Q  397 ttccgaggtactctgattcttctaaggttgcttatgttcttcaaggtaacgaaactttcatgatctaatt 466  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||    
T  11135027 ttccaaggtattctgattcttctaaggttgcttatgttcttcaaggtaaccaaagtttcatgatttaatt 11135096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 297 - 466
Target Start/End: Complemental strand, 27544092 - 27543923
Alignment:
Q  297 ggtggatcgtactatgctaggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 396  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27544092 ggtggatcgtactatgcatggtctccttctgaacttcctatgttgcgtgaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 27543993  T
Q  397 ttccgaggtactctgattcttctaaggttgcttatgttcttcaaggtaacgaaactttcatgatctaatt 466  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||    
T  27543992 ttccaaggtattctgattcttccaaggttgcttatgttcttcaaggtaaataaactttcatcatctaatt 27543923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 297 - 466
Target Start/End: Complemental strand, 23278066 - 23277897
Alignment:
Q  297 ggtggatcgtactatgctaggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 396  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  23278066 ggtggatcgtactacgcttggtcaccttctgagcttcctatgttgcgtgaaggtaacattggtgctgccaagttagcgcttcagaagaacggttttgctg 23277967  T
Q  397 ttccgaggtactctgattcttctaaggttgcttatgttcttcaaggtaacgaaactttcatgatctaatt 466  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||    
T  23277966 ttccgagatactctgattcttccaaggttgcttatgttcttcaaggtaaataaactttcattatctaatt 23277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 282
Target Start/End: Original strand, 33754247 - 33754345
Alignment:
Q  183 accaaatgagattgaatatgaaaatattaataataatgaagggtataatggtaatttccagcaaataatgggggtggctgtggctcccccttgccacccc 282  Q
    ||||||||| ||||||   |||||||||| || |||||||||||| ||| ||||||||||  |  |||| |||||||| |||||||||||||||||||||    
T  33754247 accaaatgaaattgaaatagaaaatattactattaatgaagggtaaaatagtaatttccatgatgtaat-ggggtggcggtggctcccccttgccacccc 33754345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 14800360 - 14800404
Alignment:
Q  253 ggggtggctgtggctcccccttgccacccc--agttccgccactg 295  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  14800360 ggggtggctgtggctcccccttgccaccccctagttccgccactg 14800404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 47825634 - 47825599
Alignment:
Q  253 ggggtggctgtggctcccccttgccaccccagttcc 288  Q
    |||||||| |||||||||||||||||||||||||||    
T  47825634 ggggtggcggtggctcccccttgccaccccagttcc 47825599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 297 - 464
Target Start/End: Original strand, 12280071 - 12280238
Alignment:
Q  297 ggtggatcgtactatgctaggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgccaagttagctcttcacaagaatggttttgctg 396  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||    
T  12280071 ggtggatcgtactctgcttggtctccttctgagcttcctatgttgcgtcaaggtaacattggtgctgctaagttagcgcttcagaagaatggttttgttg 12280170  T
Q  397 ttccgaggtactctgattcttctaaggttgcttatgttcttcaaggtaacgaaactttcatgatctaa 464  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  12280171 ttccgatgtattctgattcttctaaggttgcttatgttcttcaaggtaaccaaactttcttgatctaa 12280238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 44660128 - 44660056
Alignment:
Q  222 agggtataatggtaatttccagcaaataatgggggtggctgtggctcccccttgccaccccagttccgccact 294  Q
    |||||||||| ||||||||| | | | |||||||||||| |||||||||||||||||||||||||||| ||||    
T  44660128 agggtataattgtaatttcctgtatacaatgggggtggcggtggctcccccttgccaccccagttccggcact 44660056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 25534005 - 25533962
Alignment:
Q  253 ggggtggctgtggctcccccttgccaccccagttccgccactgc 296  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  25534005 ggggtggcggtggctcccccttgccaccccagttccgccactgc 25533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 21358377 - 21358419
Alignment:
Q  253 ggggtggctgtggctcccccttgccaccccagttccgccactg 295  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  21358377 ggggtggcggtggctcccccttaccaccccagttccgccactg 21358419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 12003283 - 12003377
Alignment:
Q  202 gaaaatattaataataatgaagggtataatggtaatttccagcaaataatgggggtggctgtggctcccccttgcca--ccccagttccgccactg 295  Q
    |||||||||| |  |||||||||| ||||| ||||||||||  |||  |||||| |||| |||||||| ||||||||  |||||||||||||||||    
T  12003283 gaaaatattagttttaatgaagggcataatagtaatttccataaaaggatgggg-tggcggtggctcctccttgccaccccccagttccgccactg 12003377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 21453133 - 21453227
Alignment:
Q  202 gaaaatattaataataatgaagggtataatggtaatttccagcaaataatgggggtggctgtggctcccccttgcca--ccccagttccgccactg 295  Q
    |||||||||| |  |||||||||| ||||| | ||||||||  |||  |||||| |||| |||||||||||||||||  |||||||||||||||||    
T  21453133 gaaaatattagttttaatgaagggcataataggaatttccataaaaggatgggg-tggcggtggctcccccttgccaccccccagttccgccactg 21453227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 12003135 - 12003174
Alignment:
Q  56 gagtggtcgcggcggctggccggcggtagtgtggtggttg 95  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  12003135 gagtggtcgcggcggctgaccggcggtggtgtggtggttg 12003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 52801660 - 52801791
Alignment:
Q  1 gaggaggtcaggaggatgcgtcggcgggtgatggatggagaagaaggtgacatgtgagtggtcgcggcggctggccggcggtagtgtggtggttgggttg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52801660 gaggaggtcaggaggatgcgccggcgggtgatggatggagaagaaggtgacatgtgagtggtcgcggcggctggccggcggtggtgtggtggttgggttg 52801759  T
Q  101 tctggactcgatttgctttgttgttgggagaa 132  Q
    ||| ||||||||||||||||||||||||||||    
T  52801760 tcttgactcgatttgctttgttgttgggagaa 52801791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 48183953 - 48183914
Alignment:
Q  255 ggtggctgtggctcccccttgccaccccagttccgccact 294  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  48183953 ggtggcggtggctcccccttgccaccccagttccgccact 48183914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 26354739 - 26354696
Alignment:
Q  253 ggggtggctgtggctcccccttgccacc-ccagttccgccactg 295  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  26354739 ggggtggcggtggctcccccttgccacctccagttccgccactg 26354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 52801798 - 52801831
Alignment:
Q  170 gagaaacagcaagaccaaatgagattgaatatga 203  Q
    ||||||| ||||||||||||||||||||||||||    
T  52801798 gagaaacggcaagaccaaatgagattgaatatga 52801831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 43915902 - 43915827
Alignment:
Q  219 tgaagggtataatggtaatttccagcaaataatgggggtggctgtggctcccccttgccaccccagttccgccactgc 296  Q
    ||||||||||||| ||||||||| | ||||||||||  |||| |||||||| ||||||||||||||||| ||||||||    
T  43915902 tgaagggtataatagtaatttcctgtaaataatggg--tggcggtggctcctccttgccaccccagttcagccactgc 43915827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 34213059 - 34213098
Alignment:
Q  56 gagtggtcgcggcggctggccggcggtagtgtggtggttg 95  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  34213059 gagtggtcgcggcggctgaccggcggtggtgtggtggttg 34213098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 1667867 - 1667822
Alignment:
Q  253 ggggtggctgtggctcccccttgcca--ccccagttccgccactgc 296  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||    
T  1667867 ggggtggcggtggctcccccttgccaccccccagttccgccactgc 1667822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 43300014 - 43299937
Alignment:
Q  219 tgaagggtataatggtaatttccagcaaataatgggggtggctgtggctcccccttgcc-accccagttccgccactg 295  Q
    ||||||||||||| ||||||||  | | | |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  43300014 tgaagggtataatagtaatttcttgtatacaatgggggtggcggtggctcccccttgccaaccccagttccgccactg 43299937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 3173893 - 3173849
Alignment:
Q  253 ggggtggctgtggctcccccttgcca-ccccagttccgccactgc 296  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  3173893 ggggtggcggtggctcccccttgccacccccagttccgccactgc 3173849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 18740038 - 18740081
Alignment:
Q  253 ggggtggctgtggctcccccttgcc-accccagttccgccactg 295  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  18740038 ggggtggcggtggctcccccttgccaaccccagttccgccactg 18740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 21745035 - 21745080
Alignment:
Q  253 ggggtggctgtggctcccccttgcca--ccccagttccgccactgc 296  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||    
T  21745035 ggggtggcggtggctcccccttgccaccccccagttccgccactgc 21745080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 42740890 - 42740935
Alignment:
Q  253 ggggtggctgtggctcccccttgcca--ccccagttccgccactgc 296  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||    
T  42740890 ggggtggcggtggctcccccttgccaccccccagttccgccactgc 42740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 32863377 - 32863333
Alignment:
Q  253 ggggtggctgtggctcccccttgcca--ccccagttccgccactg 295  Q
    |||||||| |||||||||||||||||  |||||||||||||||||    
T  32863377 ggggtggcggtggctcccccttgccaccccccagttccgccactg 32863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 25697957 - 25697998
Alignment:
Q  253 ggggtggctgtggctcccccttgccaccccagttccgccactg 295  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  25697957 ggggtggc-gtggctcccccttgccaccccagttccgccactg 25697998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 39367 - 39323
Alignment:
Q  253 ggggtggctgtggctcccccttgccacccc--agttccgccactg 295  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  39367 ggggtggctgtggctcccccttgccaccccctagttccgccactg 39323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 14654743 - 14654782
Alignment:
Q  56 gagtggtcgcggcggctggccggcggtagtgtggtggttg 95  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  14654743 gagtggtcgcggcggctgaccggcggtggtgtggtggttg 14654782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 16497562 - 16497606
Alignment:
Q  253 ggggtggctgtggctcccccttgccaccc--cagttccgccactg 295  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||    
T  16497562 ggggtggcggtggctcccccttgccaccccgcagttccgccactg 16497606  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 2339181 - 2339226
Alignment:
Q  253 ggggtggctgtggctcccccttgcca--ccccagttccgccactgc 296  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||    
T  2339181 ggggtggcggtggctcccccttgccaccccccagttccgccactgc 2339226  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 2733375 - 2733346
Alignment:
Q  253 ggggtggctgtggctcccccttgccacccc 282  Q
    ||||||||||||||||||||||||||||||    
T  2733375 ggggtggctgtggctcccccttgccacccc 2733346  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 52893185 - 52893141
Alignment:
Q  253 ggggtggctgtggctcccccttgcca--ccccagttccgccactg 295  Q
    |||||||| |||||||||||||||||  |||||||||||||||||    
T  52893185 ggggtggcggtggctcccccttgccaacccccagttccgccactg 52893141  T

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