View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_high_6 (Length: 401)
Name: NF12773_high_6
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 41723817 - 41723426
Alignment:
| Q |
1 |
cagcatgcttccttctagcctttgataacttaacctctttcaacagcatttgcttttctgcagtatcaagtttagattttctcaacattgctgacaaaat |
100 |
Q |
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| T |
41723817 |
cagcatgcttccttctagcctttgataacttaacctctttcaacagcatttgcttttctgcagtatcaagtttagattttctcaacattgctgacaaaat |
41723718 |
T |
|
| Q |
101 |
cttatctttttgttccaaatccttgtgaaattttgcaatctccaaagttaatttctgaaccatcaaatcagactcctctttgttctccatgacagcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41723717 |
cttatctttttgttccaaatccttgtgaaattttgcaatctccaaagttaatttctgaaccatcaaatcagactcctctttgttctccatgacagcaata |
41723618 |
T |
|
| Q |
201 |
agttcctcttttgtagcatccaaatgcttaacagcgcgaccgagttcagcttcaaggtgtctttgatttgaaaccaactcaatgaaagcagttttgtgtt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41723617 |
agttcctcttttgcagcatccaaatgcttaacagcgcgaccgagttcagcttcaaggtgtctttgatttgaaaccaactcaatgaaagcagttttgtgtt |
41723518 |
T |
|
| Q |
301 |
tcctgagatcagaagaatgttcttgaccttcacgtttagaagattctctcaattcttctgcatctttttcagcttttttcgcctttgcttct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41723517 |
tcctgagatcagaagaatgttcttgaccttcacgtttagaagattctctcaattcttctgcatctttttcagcttttttcgccttttcttct |
41723426 |
T |
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