View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_10 (Length: 331)
Name: NF12773_low_10
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 28784 - 28476
Alignment:
| Q |
18 |
gttaacatagatttaatgaaaaccacacnnnnnnngagcaagatattaattatgattaacgagtgaggtagcactagcactagcactagaa------agc |
111 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |
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| T |
28784 |
gttaacatagatttaatgaaaaccacacaaaaaaagagcaagatattaattatgattaatgagtgaggtagcactagcactagcactagcactaggaagc |
28685 |
T |
|
| Q |
112 |
agtaaagtgaagatggggctagcaacagcaagagcaactgtaagcatttgtggtgctgctgctgctgcatcaccatcaagcattgcaaagcctctccatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28684 |
agtaaagtgaagatggggctagcaacagcaagagcaactgtaagcatttgtggtgctgctgctgctgcatcaccatcaagcattgcaaagcctctccatc |
28585 |
T |
|
| Q |
212 |
ctcgttctcactgccatttccttccaacctctcttttctcctcctgtatgttctctttctttcttcatatattcactttaccctcctttcatcatctatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28584 |
ctcgttctcactgccatttccttccaacctctcttttctcctcctgtatgttctctttctttcttcatatattcactttaccctcctttcatcatctatt |
28485 |
T |
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| Q |
312 |
cacattcat |
320 |
Q |
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||||||||| |
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| T |
28484 |
cacattcat |
28476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 21354030 - 21353917
Alignment:
| Q |
179 |
catcaccatcaagcattgcaaagcctctccatcctcgttctcactgccatttccttccaacctctcttttctcctcctgtatg-----ttctctttcttt |
273 |
Q |
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||||| |||||||||||| ||||| |||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |
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| T |
21354030 |
catcagcatcaagcattgaaaagcttctctatcctcgtactcactgctatttccttccaacctctcttttctcttcctgtatgttctgttctctttctgt |
21353931 |
T |
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| Q |
274 |
cttcatatattcac |
287 |
Q |
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|||||||||||||| |
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| T |
21353930 |
cttcatatattcac |
21353917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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