View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12773_low_12 (Length: 312)

Name: NF12773_low_12
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12773_low_12
NF12773_low_12
[»] chr5 (3 HSPs)
chr5 (1-297)||(7154241-7154537)
chr5 (26-293)||(7141496-7141763)
chr5 (43-297)||(7131789-7132043)
[»] chr3 (7 HSPs)
chr3 (223-293)||(22986277-22986347)
chr3 (245-297)||(22971947-22971999)
chr3 (256-297)||(22941537-22941578)
chr3 (245-293)||(22946404-22946452)
chr3 (253-297)||(23032710-23032754)
chr3 (253-297)||(23039037-23039081)
chr3 (265-297)||(23145916-23145948)
[»] chr1 (3 HSPs)
chr1 (252-297)||(12636997-12637042)
chr1 (252-297)||(12609901-12609946)
chr1 (253-297)||(15885922-15885966)
[»] chr4 (2 HSPs)
chr4 (23-79)||(55955105-55955161)
chr4 (120-188)||(55954999-55955067)
[»] scaffold0554 (1 HSPs)
scaffold0554 (261-297)||(6722-6758)
[»] chr6 (2 HSPs)
chr6 (34-78)||(12425433-12425477)
chr6 (23-78)||(12268197-12268252)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7154241 - 7154537
Alignment:
Q  1 ataatatctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagag 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154241 ataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagag 7154340  T
Q  101 aatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154341 aatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggac 7154440  T
Q  201 tgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154441 tgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaaga 7154537  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 293
Target Start/End: Original strand, 7141496 - 7141763
Alignment:
Q  26 aactaacttactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcataga 125  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| || |||    |||| ||| | ||||  |||||    
T  7141496 aactaagttacttaaagttagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaactaaccaaaataga 7141595  T
Q  126 tggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagag 225  Q
    ||| ||||| |||||||||||||||| |||  | |||||||| |||||| | | |||||||||  ||||||||| ||||||||||| ||| |||||||||    
T  7141596 tgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagag 7141695  T
Q  226 aggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag 293  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||    
T  7141696 aggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaag 7141763  T

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Target: chr5; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 43 - 297
Target Start/End: Original strand, 7131789 - 7132043
Alignment:
Q  43 ttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaa 142  Q
    |||||||| ||||| ||  | ||||||||| ||||| | ||||||||  |||||||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  7131789 ttagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaa 7131888  T
Q  143 aaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttgatggtagttt 242  Q
    |||| |||||||| ||||| |||| ||||||  ||||||| ||||| |||||||||||||||||||||||||| | ||||||||| ||||| |||||||     
T  7131889 aaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttaatccagagagatttgaaggtagttc 7131988  T
Q  243 gattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
     |||||||| | ||| ||||||||||| ||| |||||||||| || || ||||||    
T  7131989 tattgattttagagggaataattttgaatatcttccttttggagcaggtagaaga 7132043  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 22986347 - 22986277
Alignment:
Q  223 gagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag 293  Q
    |||||||||  || |||||  |||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  22986347 gagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag 22986277  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 22971999 - 22971947
Alignment:
Q  245 ttgatttcaaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  22971999 ttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaaga 22971947  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 22941537 - 22941578
Alignment:
Q  256 ggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  22941537 ggaaataattttgagttcattccatttggtgctggaagaaga 22941578  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 22946452 - 22946404
Alignment:
Q  245 ttgatttcaaaggaaataattttgagtatattccttttggtgctggaag 293  Q
    |||||||||||||||  ||||||||||| ||||| |||||||| |||||    
T  22946452 ttgatttcaaaggaacaaattttgagtacattccatttggtgccggaag 22946404  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 23032754 - 23032710
Alignment:
Q  253 aaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||||    
T  23032754 aaaggaagtaattttgagtacattccctttggtgccggaagaaga 23032710  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 23039081 - 23039037
Alignment:
Q  253 aaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    ||||||| ||||| |||||| |||||||||||||| |||||||||    
T  23039081 aaaggaagtaattatgagtacattccttttggtgccggaagaaga 23039037  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 23145948 - 23145916
Alignment:
Q  265 tttgagtatattccttttggtgctggaagaaga 297  Q
    |||||||| ||||||||||||||||||||||||    
T  23145948 tttgagtacattccttttggtgctggaagaaga 23145916  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 12637042 - 12636997
Alignment:
Q  252 caaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||    
T  12637042 caaaggaaataattttgagtacattccttttggtgcaggaagaaga 12636997  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 12609946 - 12609901
Alignment:
Q  252 caaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||    
T  12609946 caaagggaataattttgagtacattccctttggtgctggaagaaga 12609901  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 15885922 - 15885966
Alignment:
Q  253 aaaggaaataattttgagtatattccttttggtgctggaagaaga 297  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||    
T  15885922 aaagggaataattttgagtacattccttttggttctggaagaaga 15885966  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 55955161 - 55955105
Alignment:
Q  23 atgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacctt 79  Q
    ||||||| | |||||| |||| ||||||||||||||| |||||||||||||||||||    
T  55955161 atgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt 55955105  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 55955067 - 55954999
Alignment:
Q  120 catagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatcc 188  Q
    ||||||||| ||||||||||||| ||| ||||  |||||  |||||||||||||| | | |||||||||    
T  55955067 catagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcc 55954999  T

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Target: scaffold0554 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 6722 - 6758
Alignment:
Q  261 taattttgagtatattccttttggtgctggaagaaga 297  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6722 taattttgagtacattccttttggtgctggaagaaga 6758  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 12425477 - 12425433
Alignment:
Q  34 tactttaagttagtgatcaaagaaacaatgaggttacacccacct 78  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||    
T  12425477 tacttgaagttagtgatcaaagaaaccctgaggttacacccacct 12425433  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 12268197 - 12268252
Alignment:
Q  23 atgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacct 78  Q
    ||||||| | |||||| |||| |||||||||||||||  |||||||||||||||||    
T  12268197 atgaacttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacct 12268252  T

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