View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_13 (Length: 311)
Name: NF12773_low_13
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 40616261 - 40616081
Alignment:
| Q |
67 |
gacgccagtcacacatagtaagctgattatccctagttcagtgataactttaatgcatcaaaagttcaaagaatgcaattataacaagccaacaaaagtg |
166 |
Q |
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| T |
40616261 |
gacgccagtcacacatagtaagctgattatccctagttcagtgataacttcaatgcatcaaaagttcaaagaatgcaattataacaagccaacaaaagtg |
40616162 |
T |
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| Q |
167 |
aaaatcttggacagtataatatctctacagatcatctaataaaatagaggaagaataactcgttctatacattcacatatg |
247 |
Q |
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| T |
40616161 |
aaaatcttggacagtataatatctctacagatcatctaataaaatagaggaagaataactcgttctatacattcacatatg |
40616081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 40616339 - 40616285
Alignment:
| Q |
14 |
agagcctaacagtctaagatacaaaaatgtaaacttgtaaaatgaatattaacga |
68 |
Q |
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| T |
40616339 |
agagcctaacagtctaacatacaaaaatgtaaacttgtaaaatgaatattaacga |
40616285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 40616084 - 40616052
Alignment:
| Q |
261 |
tatgaggaaacatggactttcttatgcacaatg |
293 |
Q |
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| T |
40616084 |
tatgaggaaacatggactttcttatgcacaatg |
40616052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 5476236 - 5476169
Alignment:
| Q |
84 |
gtaagctgattatccctagttcagtgataactttaatgcatcaaaagttcaaagaatgcaattataaca |
152 |
Q |
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| T |
5476236 |
gtaagctgtttatcccttattcagtgataacttgaatgcagcaaaagtt-aaagaatgcaattataaca |
5476169 |
T |
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