View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_15 (Length: 283)
Name: NF12773_low_15
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 27760300 - 27760035
Alignment:
| Q |
18 |
atgttgggtatgtacacaaccaagactttctcctacatgtaacattttacatttcgattataaaatcttgtctatctaccaaatcttattgggtgggggg |
117 |
Q |
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| T |
27760300 |
atgttggatatgtacacaaccaagactttctcctacatgtaacattttacatttcgattataaaattttgtctatctacgaaatcttattgggtgggggg |
27760201 |
T |
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| Q |
118 |
atgcaaattatttacaaaatggcattatgatgtaatattatgaatattattaagtgatttgttcgagtgcatgtttaaaaagaattacattataagtgta |
217 |
Q |
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| T |
27760200 |
atgcaaattatttacaaaatggcattatgatgtaatattatgaataatattaagtgatttgttcgagtacatgtttaaaaagaagtacattataagtgta |
27760101 |
T |
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| Q |
218 |
taaaaaataagcgattattcttatagtttacaaattgagtnnnnnnnttatagtttgaagttattt |
283 |
Q |
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| T |
27760100 |
taaaaaataagcgattattcttatagtttacaaattgagtaaaaaaattatagtttgaagttattt |
27760035 |
T |
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Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 98 - 283
Target Start/End: Complemental strand, 21636510 - 21636325
Alignment:
| Q |
98 |
aaatcttattgggtggggggatgcaaattatttacaaaatggcattatgatgtaatattatgaatattattaagtgatttgttcgagtgcatgtttaaaa |
197 |
Q |
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| T |
21636510 |
aaatcttattgggtggggggatgcaaattatttacaaaatggcattatgatgtaatattatgaatattattaagtgatttgttcgagtgcatgtttaaaa |
21636411 |
T |
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| Q |
198 |
agaattacattataagtgtataaaaaataagcgattattcttatagtttacaaattgagtnnnnnnnttatagtttgaagttattt |
283 |
Q |
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| T |
21636410 |
agaataacattataagtgtataaaaaataagcgattattcttatagtttacaaattgagtaaaaaaattatagtttgaagttattt |
21636325 |
T |
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