View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_20 (Length: 248)
Name: NF12773_low_20
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11479052 - 11478979
Alignment:
| Q |
1 |
actggatatctgcaaaatacacgttggtacgccacttaaatattatatatatttagatggaaccatacatacatctgc |
78 |
Q |
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| T |
11479052 |
actggatatctgcaaaatacacgttggtaggccacttaaatatt----atatttagatggaaccatacatacatctgc |
11478979 |
T |
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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 11566750 - 11566681
Alignment:
| Q |
8 |
atctgcaaaatacacgttggtacgccacttaaatattatatatatttagatggaaccatacatacatctgcaca |
81 |
Q |
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|||||| | |||||| |||||| |||| ||||||||| |||||| ||||||||||||||||||| |||||| |
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| T |
11566750 |
atctgccacatacacattggtaggccatttaaatattgtatata----gatggaaccatacatacatgtgcaca |
11566681 |
T |
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